Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01613 ATGGCCAGATCACAACAGCGATACCGAGGCGTCCGACAAAGGCATTGGGGCTCTTGGGTCTCCGAAATTCGACACCCTATATTGAAAACTAGGATATGGCTTGGTACTTTTGAAACTGCTGAGGATGCAGCCAGAGCTTATGATGAAGCAGCAAGGCTAATGTGTGGCACAAGAGCAAGAACAAACTTCCCTTACAACCCCAATGCGTCTCAGTCATCATCTTCAAAGCTTCTCTCAGCAACTTTAACTGCTAAACTGCACAGGTGCTACATGGCTTCGTTGCAAATGACAAGGCCATCACTGCCAGAGCCTCAGAGAGTGGCTTCACCACATGTCATCACCTCCGGAAGCAACTTCCCCATGAAGAGCAACGAAACCGAGAGAATGCTACCACAGAAGAGACAAGAGGAGAAGCAAGAAGCAGAGGGGAATTGGGTTTTGAAGAAGGTGAAGGTGGAAAGTGCTCAGCAATTCAAGCCTCTTGAAGAGGACCACATCGAGCAAATGATAGAGGAGTTGCTGCATTACGGGTCTATTGAGCTATGCTCTGTGATTCCACCACAGGCTCTTTGA 573 0.4834 MARSQQRYRGVRQRHWGSWVSEIRHPILKTRIWLGTFETAEDAARAYDEAARLMCGTRARTNFPYNPNASQSSSSKLLSATLTAKLHRCYMASLQMTRPSLPEPQRVASPHVITSGSNFPMKSNETERMLPQKRQEEKQEAEGNWVLKKVKVESAQQFKPLEEDHIEQMIEELLHYGSIELCSVIPPQAL 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01613 190 MobiDBLite consensus disorder prediction 127 141 - -
Cca03g01613 190 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677
Cca03g01613 190 CDD AP2 6 66 IPR001471 GO:0003700|GO:0006355
Cca03g01613 190 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 184 - -
Cca03g01613 190 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF003-LIKE 1 184 - -
Cca03g01613 190 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Cca03g01613 190 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Cca03g01613 190 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Cca03g01613 190 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Cca03g01613 190 MobiDBLite consensus disorder prediction 112 141 - -
Cca03g01613 190 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Cca03g01613 190 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01613 Cca-Chr3 35004991 35006340 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01613 1 190 AP2-EREBP Transcription Factor Family AT5G25190 66.316 2.74e-80 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca03g01613 AP2 6.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01613 - - gmx:100804510 329.331
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00485 05 10725578 10741274 Cca03g01613 03 35004991 35006340 PCT