LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca03g01612	ATGCTAGAGTTTACAGTGATAGGTATAAGTATAAAAGGAGGGCCAGTGGACGACTCTCCTAGGGTTTGTTTATTAGGGTTTCGGTGGATCGCTATCTCTTCGGCACTTGGCGCAGTCGAGCACCCAGAAGACGAAGGGAAAATGCCGTCGCATAAGACGTTCAGAATCAAGAAGAAGTTGGCGAAGAAGATGAGGCAGAACAGGCCCATCCCCTACTGGATCCGCATGAGAACCGACAACACCATCAGGTACAACGCTAAGCGTCGCCACTGGCGTCGCACCAAGCTTGGATTCTAA	297	0.5051	MLEFTVIGISIKGGPVDDSPRVCLLGFRWIAISSALGAVEHPEDEGKMPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF	98

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca03g01612	98	ProSitePatterns	Ribosomal protein L39e signature.	77	93	IPR020083	GO:0003735\|GO:0005840\|GO:0006412
	Cca03g01612	98	Gene3D	Ribosomal protein L39e	48	98	IPR023626	-
	Cca03g01612	98	Pfam	Ribosomal L39 protein	56	96	IPR000077	GO:0003735\|GO:0005840\|GO:0006412
	Cca03g01612	98	Hamap	50S ribosomal protein L39e [rpl39e].	48	98	IPR000077	GO:0003735\|GO:0005840\|GO:0006412
	Cca03g01612	98	PANTHER	RIBOSOMAL PROTEIN L39E	28	98	-	-
	Cca03g01612	98	PANTHER	60S RIBOSOMAL PROTEIN L39-2	28	98	-	-
	Cca03g01612	98	SUPERFAMILY	Ribosomal protein L39e	50	97	IPR023626	-

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca03g01612	48	98	Cytoplasmic Ribosomal Protein Gene Family	AT4G31985	90.196	3.57e-29	97.4

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca03g01612	K02924		-	gmx:100779071	112.849

Showing 1 to 1 of 1 entries