Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01612 ATGCTAGAGTTTACAGTGATAGGTATAAGTATAAAAGGAGGGCCAGTGGACGACTCTCCTAGGGTTTGTTTATTAGGGTTTCGGTGGATCGCTATCTCTTCGGCACTTGGCGCAGTCGAGCACCCAGAAGACGAAGGGAAAATGCCGTCGCATAAGACGTTCAGAATCAAGAAGAAGTTGGCGAAGAAGATGAGGCAGAACAGGCCCATCCCCTACTGGATCCGCATGAGAACCGACAACACCATCAGGTACAACGCTAAGCGTCGCCACTGGCGTCGCACCAAGCTTGGATTCTAA 297 0.5051 MLEFTVIGISIKGGPVDDSPRVCLLGFRWIAISSALGAVEHPEDEGKMPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 98
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01612 98 ProSitePatterns Ribosomal protein L39e signature. 77 93 IPR020083 GO:0003735|GO:0005840|GO:0006412
Cca03g01612 98 Gene3D Ribosomal protein L39e 48 98 IPR023626 -
Cca03g01612 98 Pfam Ribosomal L39 protein 56 96 IPR000077 GO:0003735|GO:0005840|GO:0006412
Cca03g01612 98 Hamap 50S ribosomal protein L39e [rpl39e]. 48 98 IPR000077 GO:0003735|GO:0005840|GO:0006412
Cca03g01612 98 PANTHER RIBOSOMAL PROTEIN L39E 28 98 - -
Cca03g01612 98 PANTHER 60S RIBOSOMAL PROTEIN L39-2 28 98 - -
Cca03g01612 98 SUPERFAMILY Ribosomal protein L39e 50 97 IPR023626 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01612 48 98 Cytoplasmic Ribosomal Protein Gene Family AT4G31985 90.196 3.57e-29 97.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01612 K02924 - gmx:100779071 112.849