Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01606 atggctcaggataagGAGATGTCTACCTCTGTTATCAATGGCAATGATTCCCTCACTGGTCACATCATTTCTACAACTATTGGAGGGAAAAATGGGGAACCCAAACAGACTATTAGTTACATGGCAGAACGAGTTGTAGGAACTGGATCATTTGGAATTGTTTTCCAGGCAAAATGCTTGGAAACTGGGGAAGCAGTGGCAATTAAGAAGGTTTTACAAGACAGAAGATACAAGAATCGTGAACTGCAGTTAATGCGTGTTATGGATCATCCAAATGTGATCTCTCTAAAGCATTGTTTCTTTTCTACTACAAGTACAGATGAACTTTTTCTTAATTTGGTGATGGAGTATGTTCCAGAGTCCATGTATAGAGTCTTAAAGCACTATAGCAATGCTAATCAAAGAATGCCAATCATCTATGTAAAactttatatgtaccagATTTTCAGGGGGTTGGCTTATATCCACACTGTTCCCAAAGTTTGCCACAGAGATTTGAAGCCTCAAAATATACTGGTGGATCCTCTTACACATCAAGTGAAGCTATGTGATTTTGGAAGTGCAAAAGTTCTAGTTAAAGGCGAAGCTAATATATCATACATATGTTCACGATTCTATCGAGCTCCGGAACTTATATTTGGTGCCACTGAGTATACAAGTTCAATTGATATTTGGTCAGCTGGCTGTGTCCTTGCTGAACTTCTTTTGGGCCAGCCATTATTCCCTGGTGAAAATGCAGTAGACCAGCTCGTTCATATTATAAAGGTGCTTGGCACACCCACACGAGAGGAAGTACGCTGTATGAATCCCAATTACAATGACTTTAGGTTTCCACAGATAAAGGCACACCCATGGCACAAGATATTCCACAAAAAGATGCCCCCAGAAGCTATTGATCTTGCATCCCGACTTTTGCAATACTCCCCAAGTCTCCGGTGCACTGCGCTTGAAGCATGTGCACATCCTTTCTTTGATGAACTTCGAGAACCCAATGCTCGCCTGCCAAATGGTCGTCCATTTCCCCCTCTATTTAACTTCAAGCAGGAATTAGCTGGAGCATCTCCTGAGCTCGTTAACAAGTTGATACCTGACCACGTGAAGCGGCAAATAGGGCTACAATTTGCTCATTCACAGGATCGTGATGATATACTTAGGGAAGTTTCAAGCTGA 1170 0.4068 MAQDKEMSTSVINGNDSLTGHIISTTIGGKNGEPKQTISYMAERVVGTGSFGIVFQAKCLETGEAVAIKKVLQDRRYKNRELQLMRVMDHPNVISLKHCFFSTTSTDELFLNLVMEYVPESMYRVLKHYSNANQRMPIIYVKLYMYQIFRGLAYIHTVPKVCHRDLKPQNILVDPLTHQVKLCDFGSAKVLVKGEANISYICSRFYRAPELIFGATEYTSSIDIWSAGCVLAELLLGQPLFPGENAVDQLVHIIKVLGTPTREEVRCMNPNYNDFRFPQIKAHPWHKIFHKKMPPEAIDLASRLLQYSPSLRCTALEACAHPFFDELREPNARLPNGRPFPPLFNFKQELAGASPELVNKLIPDHVKRQIGLQFAHSQDRDDILREVSS 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01606 389 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 1 374 - -
Cca03g01606 389 Gene3D Transferase(Phosphotransferase) domain 1 120 367 - -
Cca03g01606 389 ProSitePatterns Serine/Threonine protein kinases active-site signature. 161 173 IPR008271 GO:0004672|GO:0006468
Cca03g01606 389 ProSiteProfiles Protein kinase domain profile. 40 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g01606 389 Gene3D Phosphorylase Kinase; domain 1 25 119 - -
Cca03g01606 389 CDD STKc_GSK3 35 327 IPR039192 -
Cca03g01606 389 PANTHER BNAANNG31110D PROTEIN 1 374 - -
Cca03g01606 389 ProSitePatterns Protein kinases ATP-binding region signature. 46 70 IPR017441 GO:0005524
Cca03g01606 389 SUPERFAMILY Protein kinase-like (PK-like) 39 347 IPR011009 -
Cca03g01606 389 Pfam Protein kinase domain 40 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g01606 389 SMART serkin_6 40 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01606 Cca-Chr3 34930100 34934862 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01606 44 362 MAP Kinase Gene Family AT3G59790 35.329 5.36e-58 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Cca03g01606 Pkinase 7.7e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01606 K14502 - gmx:100779909 764.607