Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01605 ATGGATCAAGATAAAGGTGGGGAATTGGATCCGGTTCATGATGAGAATTTGAGTCATTTGGTTGAAGGGGTTGCAATTGCAAGAGCTAGTATAAGTGGAGAAGCTGGAGCTTCAGGAGAGGTGGGTAAGGATTTGGGATCTGATAAGGAGCTAAAGGAGGGAGTTAAGAACAAGCATGATCAAGAAAATATCAGAGATAACTTACCCGGGGTTGATCAGGGAACTAGTTATAATTCAAACCATTTGGTCAACCAGGAAGTGATTGAAACTGTGGTTGTCATTGAGTCTGATCAGACTGAGTACGTCAATGAAGATAATAGGAAATTGGAAGCAAAAGTTGATGAATCAGAGTTGAGCTTGGTGTCCATGAAAGCACCAAAAGGGGTGTCTGAAACTGATAAAAATTCATGTGTAATTGATATAAAGTGCAGCAGCCGCAAAAAGTTTTATGAGAGTTCTGAAGATGAAATGATTTGTAGGATTTGCCATCTGACTTCTGGGCAGCCATTGGACGAAACAACTGTTGGCACTGATAATAGTGCTCCAAGTGCAGATTTGATTCAGCTTGGTTGTGCATGTAAAGATGAGCTAGGCATTGCACACCTTCATTGTGCTGAGGCGTGGTTCAAGCTTAAGGGAAACAGGTTATGTGAAATATGCGGAGAGGCTGCAAAAAATGTTTCAGGTGTTACTAGTAATGGATTTATGGAAGAGTGGAATGATAGAAGCTTCATGGATATTGATGGCAACTCATCCCGCAGGGTTGTTGGATGCTGGCGAGGACAGCCATTTTGTAACTTCTTGATGGCATGCCTGGTAATAGCATTTGTTCTGCCATGGTTTTTTCGCGTAAATATGTTCTAG 864 0.4167 MDQDKGGELDPVHDENLSHLVEGVAIARASISGEAGASGEVGKDLGSDKELKEGVKNKHDQENIRDNLPGVDQGTSYNSNHLVNQEVIETVVVIESDQTEYVNEDNRKLEAKVDESELSLVSMKAPKGVSETDKNSCVIDIKCSSRKKFYESSEDEMICRICHLTSGQPLDETTVGTDNSAPSADLIQLGCACKDELGIAHLHCAEAWFKLKGNRLCEICGEAAKNVSGVTSNGFMEEWNDRSFMDIDGNSSRRVVGCWRGQPFCNFLMACLVIAFVLPWFFRVNMF 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01605 287 SMART ringv_2 158 221 IPR011016 GO:0008270
Cca03g01605 287 ProSiteProfiles Zinc finger RING-CH-type profile. 151 227 IPR011016 GO:0008270
Cca03g01605 287 SUPERFAMILY RING/U-box 153 222 - -
Cca03g01605 287 MobiDBLite consensus disorder prediction 54 78 - -
Cca03g01605 287 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 142 232 IPR013083 -
Cca03g01605 287 Pfam RING-variant domain 159 220 IPR011016 GO:0008270
Cca03g01605 287 PANTHER ZINC FINGER, RING-CH-TYPE 48 287 - -
Cca03g01605 287 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 48 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01605 Cca-Chr3 34920094 34923157 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01605 139 286 C3H Transcription Factor Family AT5G05830 40.523 6.73e-30 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01605 - - gmx:100776373 489.574