Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01602 ATGTCAGACGCAGAGCCTCCAAGCCCAAGCCCAAGGCCCAGGGGACCGGAGGCCAGCTCCCACACCCAAGCGTTGGACCGTCTCAAGGCCCGCCGCCGCGCCGCTCCTCGATCCCACGCCACTAGACCCCAAATCAGGTTAGAGAACCCTATCTACGACATCGTCCCTGAGGACGAGTACAACGCCCTCCACGCCCAGCGCCGCCAACAGGAGCGCTCTTTGCATCGAGTTTCCAACTTTAGCATGACGCCTGTTAAGAGAAAATATGCATTTGAACGATCTGAAATACCTACAGGTGAAAATTATGTGGTGAAAGTCAATTATTCATTCAAGGATCCAGTACTTCCCGTAGATCTTAAAGGAGAAAGTTTTTGTGCTCTCTTAGGAACCAGTTACAGTGCGCTCGAGCTTTTTCTGATTAAAAGAAAGATAAAGGGGCCTTCATGGCTACAGGTTTCAAAGTTTTCTACAATCGCAGCTTCTCAAAGAGTTAGCTGGTGCAAATTTGAAGTGACTGTTGACTCTCCTAAAAGCATAAGGAATTCATCTCCTTCAAAAATCACTTCTAAGATTCCTCCTGTAGTTGTTGCAGCGATAAACTTGAAAACCACCATCAATGAAAAGAAGAACATAAATGAGATTGTATCTGCATCCGTAATATGTTGCAATATGGTTAAGATTGACACTCCTACTCTGGCTTCAGAGTGGAAGAAACTTGGGAGGTTGACCCATTTTACCGTTATTCGTAAGATTGATGGGAAAATATTTCCGATGGGATTCAATACGGAGGTAGCGAACAAAAACAAAAAAGCTGGTTCAAATGTATTGTACGTTGAAAGCAGCGAAGGAGATTTGTTAAACCGCTTGATGTTAGAATTACACAAGTTGGATAGTGATGTTCTTGTTGGACATAATATTTCTGGATTTTACCTTGATGTTCTTCTTCAAAGATGCCAGGCTCGCGGAGTAATGAGTAGTAACTGGTCCAAACTAGGCCGCCTCAAACGTTCTAGAATGCCTACACTTGGAAGAAGAAGCAAGATTTTTGGTGCTGGAGCAGATCCTGGCATCATGTCTTGCCTTGCTGGCCGACTTCTTTGTGATACCTACTTGTGTTCCCGTGACCTATTAAAGGAGGTTAATTATTCTTTAACTCACCTTGCAAAGTCACATCTGAACAAGTTTCGGAAAGAAGTTGCTGCACATGAAGTTCCAAAAATGTTCCAAACAGCAGAATCCCTAATGGAACTTATTGAATACGGTGAAACGGATGCATGGTTGTCTATGGAACTCATGTTTTATTTAAGTATTCTTCCACTCACACGTCGGCTGACTAATATTAGTGGTAATCTGTGGGGAAAAACACTCCAGGGTGGTCGAGCGCAGAGAGTGGAGTATCTTTTGCTGCATACTTTCCATGCAATGAAATATATGGTGCCAGACAAGTTCTCAAACCATGCAAAATATACAAAATTGACGAAACGCAAGTTAACTAGTGATGTTGAGGATAGAAACTTTGATGTAAATATTGATGATGCAAACTATGACAATGATGCTTCTGAAGTGGATCATAAGAAAAACAAAAAATGTCCTTCTTATGCCGGGGGATTGGTTTTGGAGCCAAAGAAGGGTCTATATGACAAATATATATTGCTTCTAGACTTCAACAGTCTTTATCCTTCTATTATTCAGGAATACAATATCTGCTTCACAACTGTTGAGAGGTCTTTTGACGGAACTTTTCCTGGTCTACCATCTAGTAAAACAACTGGAGTCTTGCCAGAGGTGCTGGAAAAACTGGTTAAGCAGAGGAAACAGATAAAGTTGTGGATAAAGAATGAAAAGAAGAAGAATGAAAAAGCTGATCCTATTAGAGTTCAGCAACTGGATATTCAACAGCAAGCACTAAAACTTACTGCAAACAGTATATATGGGTGCCTGGGATTTTCCAATTCAAGATTCTATGCTAAGCCGTTAGCCGAGCTCATAACGCAACGAGGAAGGGAGATACTACAGAGTACTGTTGGCCTTGTTCAGAATAACTTGAATCTAGAGGTTATCTATGGCGATACTGATTCAATAATGATTTACAGTGGGCTAGAGGATATTCAGGAAGCAAATAAGATTGCTGCAAGAGTTATTCAAGAGGTCAATAAGAAATATACACGCTTGGAAATTGATCTTGATGGTTTATATAAAAGGATGCTGCTTCTTAAAAAAAAGAAGTATGCGGCTGTAAAGTTGCTGTTTAAAGATGGCACCCCATATGAGGTTATTGAACGTAAAGGTCTCGACATTGTTCGTCGTGATTGGAGCCTGTTAGCGAAAGAATTAGGAGATTTTTGCTTGACTCAAATTTTGTCGGGAGGATCATGTGAAGATGTCGTGGAGTCCATCCACAATTCTCTTATTAAGGTACAAGAAGAAATGAGGAACGGACAAGTACCATTAGACAAATATGTCATTACAAAGACATTGACCAAACCTCCTGAAGCTTATCCTGATGCCAAAAACCAGCCACACGTTCTTGTGGCACAAAGATTGAAGCATCAAGGCCACTCTTCTGGTAGCACTGTTGGTGATACAATTCCTTATATAATTTGCTATGAGCAGGGCAGTGCTTCAGGCAATGCAGCCGGCATTGCACAACGTGCCAGACATCCTGATGAACTTACAAACGGGACATGGCTGATTGACATTGATTACTATTTATCGCAACAGATCCATCCAGTGATATCACGTCTTTGTGCACCAATTCAGGGCACAAGTTCAGAAAGACTGGCTAATTGTTTAGGGCTTGACTCGTCGAAGTTTCATCATAAATCTAGTGAAGCTTTAAATGATGATTCTACAAGCTCACTCTTGTTGGTTGCTGATGATGAGGAAAGATATCGGGGATGTGAGCCATTGATCTTGACATGCCCCAGCTGCTTTGGTACATTTGGGTGCCCACCTGTCTTTAAATCTATTTGTTGTTTGTTGGGTAGTGACATGACAACCAGTGTAGCCTTGGAGGAGTCCATCTATAATTTCTGGCGTAAGCTGTGCTGTCCTAAATGCTCAGATGGTAAAATTTCTCCCGCAATGATAGTTAACCAGGTTAAAATGCAAGCAGATAAGTTTATTTTAATGTATTATAGAGGTTTATTAACGTGTGATGATGAAACGTGTAAACATACAACTCGAAGGATCAACCTTCGGTTGGTTGGTGATTATGAGAGACGAACTGTTTGTCCAAATTATCCTCGCTGCAATGGGCGTTTATTAGTTAGACAGTACACTGAAGCAGACTTGTACAGACAGCTCTCGTATTTTTGCCATGTGTTCGATACTGTTTCTTGTATAGAGAAGATGGAGGCAAAATCTAGAATACCAATAGAGAAAGAGTTGATCAAAATTAGGCCAATGATAGATCCGGCAGCCTTAAAAGCACAGAAGATCAGGGATCGTTGCCTCTTTGGGTGGGTGAGCATGCAGGATCTTTTTATGTAG 3492 0.4147 MSDAEPPSPSPRPRGPEASSHTQALDRLKARRRAAPRSHATRPQIRLENPIYDIVPEDEYNALHAQRRQQERSLHRVSNFSMTPVKRKYAFERSEIPTGENYVVKVNYSFKDPVLPVDLKGESFCALLGTSYSALELFLIKRKIKGPSWLQVSKFSTIAASQRVSWCKFEVTVDSPKSIRNSSPSKITSKIPPVVVAAINLKTTINEKKNINEIVSASVICCNMVKIDTPTLASEWKKLGRLTHFTVIRKIDGKIFPMGFNTEVANKNKKAGSNVLYVESSEGDLLNRLMLELHKLDSDVLVGHNISGFYLDVLLQRCQARGVMSSNWSKLGRLKRSRMPTLGRRSKIFGAGADPGIMSCLAGRLLCDTYLCSRDLLKEVNYSLTHLAKSHLNKFRKEVAAHEVPKMFQTAESLMELIEYGETDAWLSMELMFYLSILPLTRRLTNISGNLWGKTLQGGRAQRVEYLLLHTFHAMKYMVPDKFSNHAKYTKLTKRKLTSDVEDRNFDVNIDDANYDNDASEVDHKKNKKCPSYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSFDGTFPGLPSSKTTGVLPEVLEKLVKQRKQIKLWIKNEKKKNEKADPIRVQQLDIQQQALKLTANSIYGCLGFSNSRFYAKPLAELITQRGREILQSTVGLVQNNLNLEVIYGDTDSIMIYSGLEDIQEANKIAARVIQEVNKKYTRLEIDLDGLYKRMLLLKKKKYAAVKLLFKDGTPYEVIERKGLDIVRRDWSLLAKELGDFCLTQILSGGSCEDVVESIHNSLIKVQEEMRNGQVPLDKYVITKTLTKPPEAYPDAKNQPHVLVAQRLKHQGHSSGSTVGDTIPYIICYEQGSASGNAAGIAQRARHPDELTNGTWLIDIDYYLSQQIHPVISRLCAPIQGTSSERLANCLGLDSSKFHHKSSEALNDDSTSSLLLVADDEERYRGCEPLILTCPSCFGTFGCPPVFKSICCLLGSDMTTSVALEESIYNFWRKLCCPKCSDGKISPAMIVNQVKMQADKFILMYYRGLLTCDDETCKHTTRRINLRLVGDYERRTVCPNYPRCNGRLLVRQYTEADLYRQLSYFCHVFDTVSCIEKMEAKSRIPIEKELIKIRPMIDPAALKAQKIRDRCLFGWVSMQDLFM 1163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01602 1163 Gene3D - 192 506 IPR036397 GO:0003676
Cca03g01602 1163 Pfam DNA polymerase family B, exonuclease domain 71 385 IPR006133 -
Cca03g01602 1163 PANTHER DNA POLYMERASE ALPHA CATALYTIC SUBUNIT 75 1161 - -
Cca03g01602 1163 SMART polmehr3 192 700 IPR006172 GO:0000166|GO:0003676|GO:0003887
Cca03g01602 1163 Pfam DNA polymerase family B 451 919 IPR006134 GO:0000166|GO:0003677
Cca03g01602 1163 CDD POLBc_alpha 526 934 IPR045846 GO:0003887|GO:1902975
Cca03g01602 1163 Pfam DNA Polymerase alpha zinc finger 959 1162 IPR015088 GO:0003887|GO:0006260
Cca03g01602 1163 PANTHER DNA POLYMERASE 75 1161 - -
Cca03g01602 1163 MobiDBLite consensus disorder prediction 1 45 - -
Cca03g01602 1163 Gene3D Palm domain of DNA polymerase 532 744 IPR023211 -
Cca03g01602 1163 ProSitePatterns DNA polymerase family B signature. 688 696 IPR017964 GO:0000166|GO:0003676
Cca03g01602 1163 Gene3D DNA Polymerase alpha, zinc finger 952 1147 IPR038256 -
Cca03g01602 1163 Gene3D - 56 145 - -
Cca03g01602 1163 PRINTS DNA-directed DNA-polymerase family B signature 633 645 IPR006172 GO:0000166|GO:0003676|GO:0003887
Cca03g01602 1163 PRINTS DNA-directed DNA-polymerase family B signature 686 694 IPR006172 GO:0000166|GO:0003676|GO:0003887
Cca03g01602 1163 PRINTS DNA-directed DNA-polymerase family B signature 550 563 IPR006172 GO:0000166|GO:0003676|GO:0003887
Cca03g01602 1163 SUPERFAMILY DNA/RNA polymerases 526 934 IPR043502 -
Cca03g01602 1163 TIGRFAM pol2: DNA polymerase (pol2) 77 916 - -
Cca03g01602 1163 Coils Coil 700 734 - -
Cca03g01602 1163 Gene3D Helix hairpin bin 591 649 - -
Cca03g01602 1163 Gene3D - 764 949 IPR042087 -
Cca03g01602 1163 CDD DNA_polB_alpha_exo 192 443 - -
Cca03g01602 1163 SUPERFAMILY Ribonuclease H-like 79 473 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01602 Cca-Chr3 34840059 34853633 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01602 12 74 Core DNA Replication Machinery Family AT5G67100 45.312 6.70e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01602 K02320 - gmx:100798779 1806.96