Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01596 ATGGGGAAGCCCACAGGGAAGAAGAAGGGCAGCGctactcctactcctactcctactccGAGTGGTGCAAATTCGCACGCCAAGTCCGTGAAACCTTCGAAAGCATTCGATGAAGACACGGCACTGTTCATCAACATGTCGCAAGAGTTCAGGGAAGAAGGTAACAGGTTGTTTCAGAAGAGGGACAACGAGGGCGCCATGCTCATGTACGAGAAGGCACTGAATCTGCTCCCCAAGAATCACATCGATGTGGCGCACCTTCGTACGAGCATGGCCACGTGTTACATGCAATTGGGTCTCGGCGAATACCCTCGCGCCATTCACGAATGCAATTTGGCGTTGCAAGTGTCGCCCAGATACAGCAAAGCTCTTCTCAAAAGAGCCACCTGCTATCGTGCGCTTAATCGCTTCGATTTGGCGCTCAGAGACGTTCACCTTGTCTTGGGAATGGAGCCTAATAACCTCACCGCGTTGGAGCTTCTCGACAGTCTCGCCAAGTCAACGGAAGCCAAGGGAGTCTCTGTTGATTACAAGGAGGTGCCTTTTGATGCTCTTCTCCACTTTACTCCTCCTTCGCAGAAGCTCAAGAAAAAGAGAGCTAAAAAAATTGAGGACAAGGTGGTTGTGGAGGAAAAAGTGAAAAGTGTTGAGGATAAACAGGTGGTTTCTGGAACAGTTGAACAGGAAAAAAGGGTGGAGGAAGAAAAATCGAGTGATGAGGTTGTGAGAAAGGACAGTGGGAAGCCAAGTGATGAGGGTGTGGAAGAAGGAAAAGACATAGATGTGGCGAAAAGGATGATTAGTGTGGAGGAAGAAAGACCTGTCACAAGGACTGTGAAGTTGGTGCTTGGAGACGATATAAGATGGGCAGAGTTACCTGTGAATTGTAGCGTGAAGTTAGTGAGGGATGTAGCTAGGGATCGGTTTCCGGGTTTGAAGGGTGTTCTTGTCAAGTATAAGGATAAAGAAGGTGATTTGGTTACAATCACTACTACGGATGAACTAAGGTTAGCTGAAAAATCTGCTCCTCAGAAGGCATCTTTTCGGCTTTATATTACTGAGATCAATCCAGATCAAGAACCTTCTTATGATGGAACAACGACTAATGGGGATGAGGCCCAAAGTGGAGGTGGAAAACCGAGTGATGGTGTTGAGAATGGGAGTGTGGAAGAAGGCAAAGATAAAGATGTGGCGAAAAGGATGATTACTGTGGAGGACTGGCTTCTCCAGTTTGCAAGGCTGTTCAAGAACCATGTAGGGTTTGAGTCTGATTCTTATCTAGATAATCATGAGGTTGCAATGAAGTTGTATGAAGAAGCAATGGAGGATACGGTGGCAAGCAATGATGCTCAAGAGCTTTTTGGAATTGCTGCAGATAAATTTCAAGAGATGGCTGCTTTGGCATTGTTTAATTGGGGGACGGTTCAAATGTCCAGGGCAAGGAACCAGGGTTTCTTTTCGGAGGACGTGGCAAGAGAATCTTCCTTGGTGCATATGAAAGCTGCGTATGAGTTGGCGCAGAATGAGTACAAGAAAGCAGAAATGAGATATGAAGAAGCCTTGAAAATCAAACCTGACTTCTGTGAAGGATATCTTGCTCTTGGGCATCAGCAGTTTGAGCAAGCAAGGCTCTGCTGGTATTATGCAATGGCATGCAAGAAGGACTTAGAAGCTGGCTTTTCTGATGAGGTTCTACAACTCTATAACAAGGCAGAGGACAGCATGGAGAAAGGCATCTTGATGTGGGAGGAGATGGAGGAGCAGCGTTTGAATGGAATATCCAAATCAGACAAATGTAAAGAACAGTTAGAGAAAATGGGCTTGGATAGTCTTTTCAAAGATATTTCTTATGATGAAGCTTCAAAGCAAGCTGCAAAGATGAGGTCTCAGATACATCTTTTATGGGGAACCTTGTTGTATGAACGTTCTGTTGTGGAATACAAGCTTGGCCTTCCTACATGGGAGGAATGCTTGGAGGTTGCAGTTGAAAAGTTTGAACTAGCTGGAACTTCTGCAACGGATATTGCTTTTATTGTAAAGAATCACTGCTCAAATGAAACAGCACTTGAAGGGTTCAAAATTGATGAGATAGTACAGGCATGGAATGAAATGTATGATGCTCGAGGGTGGCAGTTTGGTGATCCATCATTTCGACTTGAACCATTGTTTCGTCGGCGTGTTCCTAAACTCCATTATATCTTGGAGCAATTTTAA 2214 0.4458 MGKPTGKKKGSATPTPTPTPSGANSHAKSVKPSKAFDEDTALFINMSQEFREEGNRLFQKRDNEGAMLMYEKALNLLPKNHIDVAHLRTSMATCYMQLGLGEYPRAIHECNLALQVSPRYSKALLKRATCYRALNRFDLALRDVHLVLGMEPNNLTALELLDSLAKSTEAKGVSVDYKEVPFDALLHFTPPSQKLKKKRAKKIEDKVVVEEKVKSVEDKQVVSGTVEQEKRVEEEKSSDEVVRKDSGKPSDEGVEEGKDIDVAKRMISVEEERPVTRTVKLVLGDDIRWAELPVNCSVKLVRDVARDRFPGLKGVLVKYKDKEGDLVTITTTDELRLAEKSAPQKASFRLYITEINPDQEPSYDGTTTNGDEAQSGGGKPSDGVENGSVEEGKDKDVAKRMITVEDWLLQFARLFKNHVGFESDSYLDNHEVAMKLYEEAMEDTVASNDAQELFGIAADKFQEMAALALFNWGTVQMSRARNQGFFSEDVARESSLVHMKAAYELAQNEYKKAEMRYEEALKIKPDFCEGYLALGHQQFEQARLCWYYAMACKKDLEAGFSDEVLQLYNKAEDSMEKGILMWEEMEEQRLNGISKSDKCKEQLEKMGLDSLFKDISYDEASKQAAKMRSQIHLLWGTLLYERSVVEYKLGLPTWEECLEVAVEKFELAGTSATDIAFIVKNHCSNETALEGFKIDEIVQAWNEMYDARGWQFGDPSFRLEPLFRRRVPKLHYILEQF 737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01596 737 Gene3D - 267 355 - -
Cca03g01596 737 MobiDBLite consensus disorder prediction 227 256 - -
Cca03g01596 737 MobiDBLite consensus disorder prediction 10 28 - -
Cca03g01596 737 Coils Coil 496 523 - -
Cca03g01596 737 ProSiteProfiles TPR repeat profile. 121 154 IPR019734 GO:0005515
Cca03g01596 737 MobiDBLite consensus disorder prediction 357 392 - -
Cca03g01596 737 SMART PB1_new 276 355 IPR000270 GO:0005515
Cca03g01596 737 PANTHER PROTEIN PHOX4 1 736 - -
Cca03g01596 737 Gene3D Tetratricopeptide repeat domain 44 171 IPR011990 GO:0005515
Cca03g01596 737 PANTHER PROTEIN CLMP1 1 736 IPR044517 -
Cca03g01596 737 CDD PB1 278 353 - -
Cca03g01596 737 SUPERFAMILY TPR-like 427 634 IPR011990 GO:0005515
Cca03g01596 737 SUPERFAMILY CAD & PB1 domains 266 364 - -
Cca03g01596 737 MobiDBLite consensus disorder prediction 359 375 - -
Cca03g01596 737 ProSiteProfiles PB1 domain profile. 276 355 IPR000270 GO:0005515
Cca03g01596 737 Gene3D Tetratricopeptide repeat domain 402 580 IPR011990 GO:0005515
Cca03g01596 737 SUPERFAMILY TPR-like 47 531 IPR011990 GO:0005515
Cca03g01596 737 SMART tpr_5 85 120 IPR019734 GO:0005515
Cca03g01596 737 SMART tpr_5 47 80 IPR019734 GO:0005515
Cca03g01596 737 SMART tpr_5 494 527 IPR019734 GO:0005515
Cca03g01596 737 SMART tpr_5 121 154 IPR019734 GO:0005515
Cca03g01596 737 MobiDBLite consensus disorder prediction 1 34 - -
Cca03g01596 737 Pfam PB1 domain 276 353 IPR000270 GO:0005515
Cca03g01596 737 ProSiteProfiles TPR repeat profile. 47 80 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01596 Cca-Chr3 34770236 34775097 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01596 31 154 Calmodulin-binding Proteins AT3G25230 27.820 5.23e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01596 - - gmx:100805760 1143.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00500 05 11078039 11082643 Cca03g01596 03 34770236 34775097 PCT