Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01586 ATGTTACCCGTGAACCCTCCGTCACCCCCTGGCGCCACCGTCACTTTCCACGGCCGCTTTGATGTCCTCTCCCTCTCCGCCACACTCCTCCTCCACGACTCGCCGGCATTCGCAaaattctcccaaaAAAAAAGGGGCACGCTTTATCTGTTTGGGAAGGTCAAAACAGGTGATTCGTATCAGAGTTGTTGTGTTATTGTTGAGAACATGCAGAGATGTGTCTATGCAGTTCCAAGCCATCCTTTGCATCGTACTGAAGTGATGATGAGTCTCGATAGAGATGTCCAGGAGTCTCGCATTTCTTCTACAGATTTCTATAAAAAGTTGCATGATGTGGTGAATGATGTTAAGAATGAGATAGCACAACTTCTCGTGAATTTAGGAGTTTCCAACTTTAGCATGACGCCTGTTAAGAGGAAAGATGCATTTGAACGATCTGAAATACCTACAGGTGAAAATTATTCATTCAATCTACAAATTAAACAGATCCTGCATATTCACCCACCCAAAGAGGCAACGATCCCTGATCTTCTGTGCTTTTAA 543 0.4365 MLPVNPPSPPGATVTFHGRFDVLSLSATLLLHDSPAFAKFSQKKRGTLYLFGKVKTGDSYQSCCVIVENMQRCVYAVPSHPLHRTEVMMSLDRDVQESRISSTDFYKKLHDVVNDVKNEIAQLLVNLGVSNFSMTPVKRKDAFERSEIPTGENYSFNLQIKQILHIHPPKEATIPDLLCF 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01586 180 Gene3D - 37 103 - -
Cca03g01586 180 PANTHER DNA POLYMERASE 43 158 - -
Cca03g01586 180 PANTHER DNA POLYMERASE ALPHA CATALYTIC SUBUNIT 43 158 - -
Cca03g01586 180 Coils Coil 106 126 - -
Cca03g01586 180 SUPERFAMILY Ribonuclease H-like 43 149 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01586 Cca-Chr3 34615108 34616301 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01586 46 158 Core DNA Replication Machinery Family AT5G67100 53.097 5.56e-38 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01586 K02320 - ccaj:109798135 227.254