Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01584 ATGCTTTCGGAGGAAGTGTCGACCACTTCTTTAAGAAGCAATTGCATCTCTCATCTAGCACCATCCGTAGCAGAAGACAATGAAAGCATAAAGACGAAGAAATTAGACCTTGGAGGCGGTCGATGGCGAAGGACACGAAATCCTCGAGCCTGCCTTCGAGCGCTGGGACGGAGCGACAATTTCTTCGTTTTTATGCTTTCATTGTCTTCTGCTACTTCGAATTCAAGAGATCTGCTCTATCGCTCCGTCCCAGCGCTCGAAGGCAGGCTCGAGGATTTCGTGTCCTTCGCCATCGACCGCCTCCAAGTTCTCAAGGGGATTTCTGATGGTTTGTCGCGGGGAAAGAAACCTGACGAAATGGAAAATTTGGTAAAGGACCTGTGGAAAGTGAATATGAGACACCAACACGCATCTGAGGTTCCAAACAAGGATATTATATCTCATTTTGTTCTTCGTTTGGTGTATTGCAGAACGGAGGACCTGAGGAAATGGTTTCTTTCTATGGAATCTGCACTCTTTCGATACCGTTTTCGTCTTCTGAATGCTGAAGCTCAGAGGGCAGTCATGGATGAATTTGACCTTCCTTACAGGGCTGTTAGCAATGTGGAATTTGAGAGCATAAAAGAGAAATTGGGACAAGTTGCACGTTCTATGGGTCAGCCTTCACCCACTGTTGATGCTATCTTCTACAAGGTACCATTTGAAGAAGTTCCAGAGCTTGTTGCTGGACGGAAAGTGTTTATAAATCAAGGATATGCATATGTTGCAATGAATCAGATTGTTTCACTTGTAGCCACACTATTCCGCAGTCAGCTGTCAAAGACACTCATCCTTACTAACAGAAAATGGACATCTTCAATTAGAGAACAAGAAAAACATAGGTGGACTCCTATTGTGGAAGCCCTATGCTCAAGTGATCTGGGTCCTGATTATTCTCAGTCAAGAGAATATGGTGATATGTCATTAAAGGACATTGATCAAGTTGCCAAGAGCTCATTTCCTTTGTGCATGCGTCACCTATTTGATAAGCTGAGGGAGGATCATCATTTAAAGCATGGAGGGAGGATGCAACTAGGCCTCTTTCTCAAGGGTGTTGGCTTGAATTTGGATGATGCACTTGCGTTTTGGAGGGCGGAGTTCTCTAAAAAGGTTGGTTTGGAGAAGTTTGAGAAACAATATGCGTACAGCATACGCCATAATTATGGAAAGGAAGGGAAGAGAACTGATTATACTCCCTATTCTTGTCTAAAGATTATTTCATCTACTCCCGGAGCTGGAGATCATCATGGTTGCCCCTATCGACATTTCAGTGAAGAGAATCTAAGAGCTGCTCTCAGTAGAATGGGGGTAAACAGTCGATCAATGGAAGATGTGATAGACAAAGTGAGAAATAGACATTATCAGTTGGCTTGCACCTTAACATTTGAAGCTCTTCATGGCATGCCTCTAAGAAGGATTCTTCAGCCTAGAGAATTTTGGTTATTGCAGAAGACTGGTTCTGGGGCCCATCTCAGGCGTGGGTTGGTGCCTCTAGTCATGGATTTGCAGAGCAGACAATGGTAA 1563 0.4408 MLSEEVSTTSLRSNCISHLAPSVAEDNESIKTKKLDLGGGRWRRTRNPRACLRALGRSDNFFVFMLSLSSATSNSRDLLYRSVPALEGRLEDFVSFAIDRLQVLKGISDGLSRGKKPDEMENLVKDLWKVNMRHQHASEVPNKDIISHFVLRLVYCRTEDLRKWFLSMESALFRYRFRLLNAEAQRAVMDEFDLPYRAVSNVEFESIKEKLGQVARSMGQPSPTVDAIFYKVPFEEVPELVAGRKVFINQGYAYVAMNQIVSLVATLFRSQLSKTLILTNRKWTSSIREQEKHRWTPIVEALCSSDLGPDYSQSREYGDMSLKDIDQVAKSSFPLCMRHLFDKLREDHHLKHGGRMQLGLFLKGVGLNLDDALAFWRAEFSKKVGLEKFEKQYAYSIRHNYGKEGKRTDYTPYSCLKIISSTPGAGDHHGCPYRHFSEENLRAALSRMGVNSRSMEDVIDKVRNRHYQLACTLTFEALHGMPLRRILQPREFWLLQKTGSGAHLRRGLVPLVMDLQSRQW 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01584 520 CDD PriL_PriS_Eukaryotic 79 482 IPR016558 -
Cca03g01584 520 PANTHER DNA PRIMASE LARGE SUBUNIT 71 481 IPR007238 GO:0006269
Cca03g01584 520 Pfam Eukaryotic and archaeal DNA primase, large subunit 229 491 IPR007238 GO:0006269
Cca03g01584 520 Gene3D - 66 302 - -
Cca03g01584 520 PANTHER DNA PRIMASE LARGE SUBUNIT 71 481 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01584 Cca-Chr3 34596657 34605327 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01584 79 480 Core DNA Replication Machinery Family AT1G67320 67.580 0.0 617
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01584 K02685 - gmx:100806321 754.207