Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01580 ATGAATTTTTACGAGGGTTCAATTGGTGACAAGATGGCTAGACTTAGAGAAGGAAGGATTTCGTTGCCTGATGTTCTGAGGTATGGTATCAATATGGCTCAAGGTATTCATGAACTTCACTCGAAAGGGATCCTAGTTCTCAACCTTAAACCATCTAATGTGCTTCTCAACGATAGTGATCAAGCAATACTGGGAGATGTAGGTATTCCGAATCTACTTTTTGGTTCCTTATTCCTAAGCTCAGATATGGCCAACAGGCTTGGTACTCCAAATTACATGGCTCCAGAACAATGGCAACCAGATGTCAGAGGCCCTATATCCTTTGAAACAGATTCATGGGGATTTGGGTGCACTATTGTTGAAATTTTGACTGGTAATCAACCTTGGTATGGGTGTCCTGTTAGTGAGATATACAGATCGGTTGTTGAAAAGCATGAAAAGCCCCAGATTCCTAGTGGCCTTCCTTCTTCAGTTGAAAATATCCTCAGCGGATGTTTTGAATATGATTTGAGAAATCGCCCTTCAATGGTAGATATTTTGACCGTCTTTAGAAGTTCACTGAGTGCAGTAGCCAATGATGGAGGATGGAGATATCTTGGAACTCACAAATCTTTAGCAAAATCAAGTGGCACTGACTACACACAGTGGTTCCTCTCAAAGGATCATCTTCAGGTGGGTGACACAGTGCGCTCTAGAAAGCCTTCCAATTCATGCAAACCTCAAAACATGGACGTCCCAGAAGGAAATGTTGTTGGTTTAGAACGTAATGCTGGTCACGGATTTGTTTTAGTGAGGATCCATGGTGTTCATGACCCTGTAAGGATTCATGCATCGACTCTTGAACGTGTCACTAATGGTCTGGCAGCTGGGGATTGGGTACGCTTGAAGGAAGAAGATGAGAAGCACTCGCCTGTGGGTATTCTTCATTCTGTCGATCGTGATGGCAGAGTGAGTGTTGGGTTTATTGGCCTGCAAACTCTTTGGAAAGGAAACTCTTCAGAGCTTGAAATGGCAGAATCTTACTGTGTAGGCCAGTTTATTAGGCTGAAAGCCAATGTTTTGAGTCCTCGATTCGAATGGCCACATAAAAGGGGAGGTGCCTGGTCTACTGGTAAGATTTCTTGGATCCTACCAAATGGATGCCTAGTTGTCAAGTTTCCAGGCATGTTGAACTTTGGGGGTGAACCAAGCACTTTCTTGGCTGATCCCTCAGAGGTTGATGTGATTAATTTTAAGAATTGTCCAAGGATGATAGAGAAGTATCAACATGTAGAGGATCACCACTGGGCTGTTAGACCTGTTCTAATTGCATTTGGCCTTCTCACTGCTGTGAAACTAGGGATGTCAATTGGAAAGAAAGTTGGGAGAAACATGAATGTTAATGCAATGGAGAATGAAAGTCATTATACAGATAGCCAGAGTGCTAGCAGCCCTACATGGACATCTTCAGTAGCTAACATCCTTTTCAGAGAAGGTGTTAACTTACCCACTGGCCGGTAG 1500 0.432 MNFYEGSIGDKMARLREGRISLPDVLRYGINMAQGIHELHSKGILVLNLKPSNVLLNDSDQAILGDVGIPNLLFGSLFLSSDMANRLGTPNYMAPEQWQPDVRGPISFETDSWGFGCTIVEILTGNQPWYGCPVSEIYRSVVEKHEKPQIPSGLPSSVENILSGCFEYDLRNRPSMVDILTVFRSSLSAVANDGGWRYLGTHKSLAKSSGTDYTQWFLSKDHLQVGDTVRSRKPSNSCKPQNMDVPEGNVVGLERNAGHGFVLVRIHGVHDPVRIHASTLERVTNGLAAGDWVRLKEEDEKHSPVGILHSVDRDGRVSVGFIGLQTLWKGNSSELEMAESYCVGQFIRLKANVLSPRFEWPHKRGGAWSTGKISWILPNGCLVVKFPGMLNFGGEPSTFLADPSEVDVINFKNCPRMIEKYQHVEDHHWAVRPVLIAFGLLTAVKLGMSIGKKVGRNMNVNAMENESHYTDSQSASSPTWTSSVANILFREGVNLPTGR 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01580 499 Gene3D Transferase(Phosphotransferase) domain 1 5 204 - -
Cca03g01580 499 Pfam Protein tyrosine and serine/threonine kinase 6 181 IPR001245 GO:0004672|GO:0006468
Cca03g01580 499 PANTHER OS06G0639500 PROTEIN 1 494 - -
Cca03g01580 499 SUPERFAMILY Protein kinase-like (PK-like) 1 181 IPR011009 -
Cca03g01580 499 ProSiteProfiles Protein kinase domain profile. 1 187 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g01580 499 PANTHER OS06G0639500 PROTEIN 1 494 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01580 Cca-Chr3 34545446 34550795 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01580 6 180 MAP Kinase Kinase Kinase AT2G32510 31.111 1.79e-19 88.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-1 Cca03g01580 PK_Tyr_Ser-Thr 5.7e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01580 - - gmx:100780636 902.123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01580 03 34545446 34550795 Cca03g01580 03 34545446 34550795 ECH
Cca03g01580 03 34545446 34550795 Cca05g00515 05 11682841 11688072 ECH
Cca05g00515 05 11682841 11688072 Cca03g01580 03 34545446 34550795 PCT