Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01576 ATGGAGCTTCAGTTAGGTCTTGCTCTCCCCACTCACAACCCCGTTGAGGAGTTCAACCTTAACAAACAGATGGTGAGTTTAGAGTTGTGGAGACCCGGTTGCGGTTATGAAAGCGAAAAGCATGTCAAACACAATAAGCGCAGCTTCGAAGAGTCATTTGAACATTTTTTTAAACCTTTGCCTTTACTAGTGTGGAGTGGACAGCCAAATGAAGAAGATGATCGTAGTAAAAAGACTCAAAGAAACATTCACTCACCAAACAAGAAAGGTGATGAAGAAAACCATTTGGTGGGGTGGCCACCAGTTAAATCATGGAGGAGGAAAGAACTCCATCAACAGCGTCCTGAGAGAGGCCAAATCAGGAACAATAGGATTCAAGCTAATGAGAATCAACGTAGAGGATCAAACTCTTTGTATGTCAAAGTTAACATGGAAGGGGTAGCCATAGGAAGGAAAATCAATTTGAGGCTTTTCAATTCTTATCAGACACTTACAAGCACCTTGATCAGCATGTTTGCTAAATACCAAAAATTAGAGGAACCTGAAGAAAGTTACACACTCACCTTTCAAAACGATCAAGGGGATTGGCTGCAAGTAGGACATGTTCCATGGCAGTATGTGCTTATTTTATATATACTTTGA 642 0.4097 MELQLGLALPTHNPVEEFNLNKQMVSLELWRPGCGYESEKHVKHNKRSFEESFEHFFKPLPLLVWSGQPNEEDDRSKKTQRNIHSPNKKGDEENHLVGWPPVKSWRRKELHQQRPERGQIRNNRIQANENQRRGSNSLYVKVNMEGVAIGRKINLRLFNSYQTLTSTLISMFAKYQKLEEPEESYTLTFQNDQGDWLQVGHVPWQYVLILYIL 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01576 213 MobiDBLite consensus disorder prediction 70 118 - -
Cca03g01576 213 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 1 206 IPR003311 GO:0005634|GO:0006355
Cca03g01576 213 Pfam AUX/IAA family 37 205 IPR033389 -
Cca03g01576 213 Gene3D - 132 211 - -
Cca03g01576 213 PANTHER AUXIN-RESPONSIVE PROTEIN IAA29 1 206 - -
Cca03g01576 213 ProSiteProfiles PB1 domain profile. 137 213 IPR000270 GO:0005515
Cca03g01576 213 SUPERFAMILY CAD & PB1 domains 131 207 - -
Cca03g01576 213 MobiDBLite consensus disorder prediction 67 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01576 Cca-Chr3 34522673 34524370 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01576 117 204 B3 DNA Binding Superfamily AT2G46530 32.955 1.20e-09 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Cca03g01576 AUX_IAA 4.5e-29 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01576 K14484 - gmx:100802759 360.533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01576 03 34522673 34524370 Cca03g01576 03 34522673 34524370 ECH