Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01572 ATGGGAAAACATTGGTCTTTCTTCCATGTTATGGGTACCCTTTTCGTTTTGTCCAAAGTGTGTTTAGCTGGGACTCAATACACTGGAAGGGTCTCACCCGTGTTGAAGGGTTCTCAAATGAATTGGATTGACAGAGATGGCATGTTCCTCTTGTCGAATGAGGGACAATTTGCCTTCGGATTTGTCACCGTAAGTAATGACAGCACCAAGTTTGTACTTGCAATCACCCACGTGGCTACTTCCAGGGTGGTTTGGACTGCTAATAGAGCAGTTCGTGTTTCTAATTCCGACAATTTTGTGTTTGATGAAAAGGGCAACGCTTTCTTACAGAAAGATGGAACCGTGATATGGTCCACAAACACTAGTAGCAAAGGGGTTTCTTCAATGGAATTGAGGGACACTGGGAATTTGGTTTTGCTTGGAAGTGATAATAGTACCATAATTTGGCAGAGTTTCACCCATCCAACGAATACTTTGTTGCCAAATCAGGAGTTCACAGAGGGAATGAAACTCATCAGCGATCCAAGCTCAAACAACTTGACCCATGTTCTTGAGATCAAGTCTGGTGATGTTGTTCTCACCGCAGGTTTTCAAACTCCGCAGCCTTATTGGACTATGCAAAAGGACAACCGCAAAGTCATCAATAAGATTAACGGTGATGCGGTGGCTTCAGCAAACATTAGTGAAAACTCATGGAGGTTCTATGACAAAAGCAAATCGATGTTGTGGCAATTCATTATCTCTTCAGATTCAGGCACTAATGATACTTGGATTGCTGTCTTGGGGAGTGATGGCTTCATCACTTTCTCGAACCTCAACGGTGGAGTGTCAAATGCTGCTGCTGCTCCAACAATACCTCAAGATCCTTGTGATACACCAGAACCTTGTGATGCATACACCATATGCTCAGATAACCAAAGATGTAGCTGCCCTTCTGCTGTTCCTAGTTGCAAACCTGGTTTTGATTCTCCTTGTGGTGCTGGCTCAGAAAAGTCCATTCAGCTGGTTAAAGCTGATGATGGACTTGATTACTTTGCACTTCAATTCCTTCAACCTTTTTCCAAAACTGATTTGGATGGTTGCCAAAAATCTTGCCGTGGAAACTGCTCATGCCTTGCTTTGTTCTTCCACAGAAGTTCAGGGAACTGTTTCCTGTTGGACAGTGTAGGAAGCTTTAAGAAACCTGATTCTGATTCTGGTTATGTTTCTTACATCAAGGTATCGAGAGATGGAGGCACTGGCGAGGGTTCTGGGGGCAGTGGAGGTGGCAATAAGCACACCATAGTTGTTGTGGTCATTGTCTTATCAACCTTGCTAGTCATTTGTGGTATAGTCTTTGTGGGAGTTAGATACCACAGGAGAAAGCAAAGGTTGCCCGAGTCTCCTAGACAGGATTCAGAAGAGGACAATTTCTTGGAGAATTTAACTGGTATGCCAATTCGgcttcttgcttatgagtacatgcctaatggctccttggataaatggatattcaagaaaaaccaagattgtgactctaagattgttcattgtgacatcaagcccgaaaatgtgctcctggatgatcacttcatggccaaggtttcggatttcgggctggctaagctcatgaatcgagaacagagccacgttttcacaacactcagaggcaccagaggctatcttgctccggagtggataacgaactatgctatatcagagaaaagtgatgtctacagctatgggatggtgctgcttgagatcattgggggaaggaaaaactATGATCCTGGTGAGACTTCAGAGAAATCTCATTTCCCAACTTATGCTTTTAAGATGATGGAAGAAGGGAAGCTGAGGGATATTTTTGACTCGGAGTTGAGAATTGATGAGAATGATGATAGGCTTCAATGTGCTATAAAAGTTGCATTGTGGTGCATACAAGAAGACATGTCAATGAGGCCTTCTATGACAAGAGTTGTGCAAATGTTGGAGGGTCTTTGTACTGTTCCTAAGCCACCAACCAGTTCTTCCTTGGGTTCTCGCCTTTACTCCAATGTGTTCTTCAAATCTTCCAGTGAAGGAGGCACCTCTTCTGGCCCATCTGATTGTAACAGTGATGCTTATCTCTCTGCGATAGAGATAATGAGATTGGGTGTGAGTAAAGACGTTGTGCGGTGCTCAATCGGCACCACTCCGGGTGAGTCCAAAACCCATTTTCCCGCCAAATTACAACCTTCATCTTTCTCAACGGTCAAATTCCGCACCGACAATGCTTCTTCAGATTTAGCGGTTTCAAGTAGTAGCAGAAGAGGGCTAATATGCATAGCCACGTTGCCATGTCTTCTTCCTCTCATAGGCTCTCTCCCAGCCAACGCCATGCAGCCAGGTGCAAAGGAATATCTTCTCATTAAAGAAGAGGTGAGGAAAGTATTGTCAAAGGCAAAGGCTGCGGGTGTGCTTCGTTTGGTTTTCCACGATGCTGGAACCTTTGATATCGATGACAATACAGGTGGTATGAATGGTTCTATAGTCTACGAGCTTGAAAGACCTGAAAATGCTGGCCTGAAAAAATCAATAAAGGTTCTGCAAAAAGCAAAGACTCAGATAGATGCTATCCAACCAGGTCCTTCTTCTATCTGGTAA 2625 0.3848 MGKHWSFFHVMGTLFVLSKVCLAGTQYTGRVSPVLKGSQMNWIDRDGMFLLSNEGQFAFGFVTVSNDSTKFVLAITHVATSRVVWTANRAVRVSNSDNFVFDEKGNAFLQKDGTVIWSTNTSSKGVSSMELRDTGNLVLLGSDNSTIIWQSFTHPTNTLLPNQEFTEGMKLISDPSSNNLTHVLEIKSGDVVLTAGFQTPQPYWTMQKDNRKVINKINGDAVASANISENSWRFYDKSKSMLWQFIISSDSGTNDTWIAVLGSDGFITFSNLNGGVSNAAAAPTIPQDPCDTPEPCDAYTICSDNQRCSCPSAVPSCKPGFDSPCGAGSEKSIQLVKADDGLDYFALQFLQPFSKTDLDGCQKSCRGNCSCLALFFHRSSGNCFLLDSVGSFKKPDSDSGYVSYIKVSRDGGTGEGSGGSGGGNKHTIVVVVIVLSTLLVICGIVFVGVRYHRRKQRLPESPRQDSEEDNFLENLTGMPIRLLAYEYMPNGSLDKWIFKKNQDCDSKIVHCDIKPENVLLDDHFMAKVSDFGLAKLMNREQSHVFTTLRGTRGYLAPEWITNYAISEKSDVYSYGMVLLEIIGGRKNYDPGETSEKSHFPTYAFKMMEEGKLRDIFDSELRIDENDDRLQCAIKVALWCIQEDMSMRPSMTRVVQMLEGLCTVPKPPTSSSLGSRLYSNVFFKSSSEGGTSSGPSDCNSDAYLSAIEIMRLGVSKDVVRCSIGTTPGESKTHFPAKLQPSSFSTVKFRTDNASSDLAVSSSSRRGLICIATLPCLLPLIGSLPANAMQPGAKEYLLIKEEVRKVLSKAKAAGVLRLVFHDAGTFDIDDNTGGMNGSIVYELERPENAGLKKSIKVLQKAKTQIDAIQPGPSSIW 874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01572 874 Gene3D Transferase(Phosphotransferase) domain 1 488 666 - -
Cca03g01572 874 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 481 502 - -
Cca03g01572 874 SUPERFAMILY Heme-dependent peroxidases 798 861 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cca03g01572 874 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 8 481 - -
Cca03g01572 874 ProSitePatterns Peroxidases active site signature. 810 821 IPR019794 GO:0004601
Cca03g01572 874 CDD B_lectin 43 155 IPR001480 -
Cca03g01572 874 Gene3D - 41 154 IPR036426 -
Cca03g01572 874 SMART blect_4 41 155 IPR001480 -
Cca03g01572 874 ProSitePatterns Serine/Threonine protein kinases active-site signature. 508 520 IPR008271 GO:0004672|GO:0006468
Cca03g01572 874 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 481 502 - -
Cca03g01572 874 Pfam D-mannose binding lectin 83 166 IPR001480 -
Cca03g01572 874 CDD PAN_AP_plant 353 408 - -
Cca03g01572 874 ProSiteProfiles Protein kinase domain profile. 319 660 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g01572 874 SMART serkin_6 374 657 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g01572 874 PRINTS Plant ascorbate peroxidase signature 828 838 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cca03g01572 874 PRINTS Plant ascorbate peroxidase signature 840 864 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cca03g01572 874 PRINTS Plant ascorbate peroxidase signature 810 825 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cca03g01572 874 Pfam Protein kinase domain 506 655 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g01572 874 SUPERFAMILY alpha-D-mannose-specific plant lectins 81 206 IPR036426 -
Cca03g01572 874 Gene3D - 790 869 - -
Cca03g01572 874 Pfam Peroxidase 799 869 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca03g01572 874 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 8 481 - -
Cca03g01572 874 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 502 708 - -
Cca03g01572 874 ProSiteProfiles Bulb-type lectin domain profile. 35 152 IPR001480 -
Cca03g01572 874 SUPERFAMILY Protein kinase-like (PK-like) 477 679 IPR011009 -
Cca03g01572 874 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 502 708 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01572 Cca-Chr3 34465346 34473324 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01572 481 669 Receptor kinase-like Gene Family AT5G20050 44.348 8.13e-50 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Cca03g01572 Pkinase 9e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01572 - - gmx:100791158 821.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01572 03 34465346 34473324 Cca03g01572 03 34465346 34473324 ECH
Cca03g01572 03 34465346 34473324 Cca05g00520 05 11768174 11777963 ECH
Cca05g00520 05 11768174 11777963 Cca03g01572 03 34465346 34473324 PCT