Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01568 ATGTCACGTTTGCTGCATGGGAGGCTCGATGTGATCATATACGAGGTCGACACATTACCAACTCTTAACGATTGCAATTTCAATCTCTGCTGCAAGGGTACAAGTAGAAGTGTGGGGAAAAGATTTCTTTCACAACTCAAGAGTTGTTTGTTATGTCAATGCCCATGTCAGTCTGAGTTTACTGAGACGGGTCTCTATGCAACAGTTGATTTAGATAAAGCAAGAGTTGGAAGAACTAGATTGTTAAATGGTCATCCTTCCAACCCAACTTGGTACGAGACCTTTCACATATATTGTGCCCATTTGATCTCCCATGTTATATTCACTATCAAACGAAAAGACCCAATTGATGCAACTCTAATTGGAAGAGCTTATGTCCCAGTTGAGCAAGTTGTAAAAGGCAACATAGTGGATACATGGGTCCAAATATTAGACGAGGATCATAACCCCATACCAAGTGAATCTAAAATCCATGTCAAAATGCAATTCTTTGATGTTATGAATGACGTAAATTGGTCTCAAGGAATAAGGAGTCCAAGGTTTCAAGGAGTTCCTCACACATTCTTTAGTCAAAAAAATGGTTGTAAAGTTACTTTGTACCAAGATGCCCACGTTTCAGATGGTTTTATGCATCAGATCCGATTATCAAGAGGAAAACCTTATGAGTTTAGGAAATGTTGGGAAGATATTTACAACACCATTATGGACGCTAGGTACTTTATTTGCATAACTGGTTGGTCTGTGTACACGGAAATAACCTTGATTAGGGACCCAAGGAAGTCTAGAATCACTCTCGGGGAACTACTCAAGATGAAAGCTGAGGAAGGTGTTATGGTTCTTATGCTTGTTTGGGATGACAGAACCTCTGTGCCAGATTTCAAGAAAGATGGTTTGATGGCAACCCATGATCAAGAAACTGCTGATTACTTCAGAAACACAAAGGTGAATTGTGTTTTGTGTCCACGAAACCCGGATGATGGGAGAAGCATAGTGCAAGGCTTTGAAATTTCAACAATGTTCACTCATCACCAAAAGACAATAGTTGTCGATAGCAAAGTTGTTGGTGCTGCTATGGGACAATTGCAAAAGAGAACAGTAGTAAGTTTCATTGGTGGCATTGATCTTTGTGATGGGAGGTATGATACTCAGGAACATCCTCTATTTTCAACTTTGAACACAATCCATCATGATGATTTCCACCAACCAAATTTCCCAAGTGCTTCCATCAAGAAAGGTGGTCCAAGAGAGCCATGGCATGACATTCACTGCAAGTTAGAAGGGCCTGTTGCTTGGGATGTTTTGTTTAATTTTCAGCAAAGGTGGGAGAAGCAGGTTGGGAATCAAATCGTGTTCCCTTCAAACATGTTTGGTGATCACTTTGTCCCTCAATCTACTGTGCCAACAACAGATGAAAATGAAGAATGGAATGTTCAATTGTTTAGATCCATTGACGGTGGTGCTGCTTCTGGCTTCCCCCAAGACCCAGATAAAGCGGCTGAACTAGGCCTTGTTAGTGGGAAAGATAATGTCATTGACAGAAGCATTCAAGATGCTTATATAAATGCTATTCGGCGTGCCAAAAACTTCATCTACATTGAAAACCAGTATTTCCTAGGGAGCTCATATGGTTGGCAAGCATCTGATATTAAAGTTGAGGATATTGGCGCATTGCATCTTATACCAAAAGAGTTGTCATTAAAGATTGTTAGCAAAATTGAATCGGGAGAAAGGTTTTCTGTGTATGTTGTTATACCAATGTGGCCAGAAGGCATACCTGAGAGTGGTTCAGTTCAAGCAATATTAGATTGGCAAAGGAGAACAATGGAGATGATGTATGCTGATATAGCTAAAGCCATTCGCAAAAAAGGAATAGAAGCCAATCCAAGGGACTACTTGACCTTCTTTTGCCTTGGAAACCGTGAGGGTAAGAAAGATAAAGAATACACACCTACTGAGAAACCAGAGCTTGTTAGTGATTATAGTAGAGCACAAAAGTCTAGGCGATTCATGATCTATGTTCATGCCAAGATGATGATAGTCGATGATGAATACATAATAATTGGTTCTGCCAACATAAATCAAAGATCAATGGATGGAGCAAGAGACACTGAGATTGCAATGGGTGCATTCCAACCACGTCATGGAGCATATAACGAGTCACCCAGAGGGCAAATATATGGATTTCGACGAGCACTATGGTATGAGCACCTTGGAAATCTTAATGAAGCAAACATCTTTGACTATCCAGAAAGTGTGGAGTGCATCAGGCTTGTGAATCATCTTGCTGAGATGAACTGGGACATATACTCAAAGGAAACTTTTGATGAGAATACAACATTTAACCACCTCATGCGTTACCCTATAGAAGTAACTTACAATGGAGCCATAACAATCCTTCCGGGCCTTGAATATTTTCCTGACACTAAGGCTAGAATTTTGGGTTCCAAATCAGATTACCTTCCTCCAATTCTCACCACCTAG 2481 0.4035 MSRLLHGRLDVIIYEVDTLPTLNDCNFNLCCKGTSRSVGKRFLSQLKSCLLCQCPCQSEFTETGLYATVDLDKARVGRTRLLNGHPSNPTWYETFHIYCAHLISHVIFTIKRKDPIDATLIGRAYVPVEQVVKGNIVDTWVQILDEDHNPIPSESKIHVKMQFFDVMNDVNWSQGIRSPRFQGVPHTFFSQKNGCKVTLYQDAHVSDGFMHQIRLSRGKPYEFRKCWEDIYNTIMDARYFICITGWSVYTEITLIRDPRKSRITLGELLKMKAEEGVMVLMLVWDDRTSVPDFKKDGLMATHDQETADYFRNTKVNCVLCPRNPDDGRSIVQGFEISTMFTHHQKTIVVDSKVVGAAMGQLQKRTVVSFIGGIDLCDGRYDTQEHPLFSTLNTIHHDDFHQPNFPSASIKKGGPREPWHDIHCKLEGPVAWDVLFNFQQRWEKQVGNQIVFPSNMFGDHFVPQSTVPTTDENEEWNVQLFRSIDGGAASGFPQDPDKAAELGLVSGKDNVIDRSIQDAYINAIRRAKNFIYIENQYFLGSSYGWQASDIKVEDIGALHLIPKELSLKIVSKIESGERFSVYVVIPMWPEGIPESGSVQAILDWQRRTMEMMYADIAKAIRKKGIEANPRDYLTFFCLGNREGKKDKEYTPTEKPELVSDYSRAQKSRRFMIYVHAKMMIVDDEYIIIGSANINQRSMDGARDTEIAMGAFQPRHGAYNESPRGQIYGFRRALWYEHLGNLNEANIFDYPESVECIRLVNHLAEMNWDIYSKETFDENTTFNHLMRYPIEVTYNGAITILPGLEYFPDTKARILGSKSDYLPPILTT 826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01568 826 CDD C2_plant_PLD 1 164 - -
Cca03g01568 826 SUPERFAMILY Phospholipase D/nuclease 168 452 - -
Cca03g01568 826 SMART pld_4 338 379 IPR001736 GO:0003824
Cca03g01568 826 SMART pld_4 669 696 IPR001736 GO:0003824
Cca03g01568 826 Gene3D Endonuclease Chain A 481 712 - -
Cca03g01568 826 Pfam Phospholipase D C terminal 744 816 IPR024632 -
Cca03g01568 826 Pfam C2 domain 60 142 IPR000008 -
Cca03g01568 826 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 669 696 IPR001736 GO:0003824
Cca03g01568 826 PIRSF PLD_plant 1 826 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Cca03g01568 826 PANTHER PHOSPHOLIPASE D ALPHA 3 3 826 - -
Cca03g01568 826 PANTHER PHOSPHOLIPASE D 3 826 IPR015679 -
Cca03g01568 826 Gene3D Endonuclease Chain A 213 470 - -
Cca03g01568 826 SMART C2_3c 8 140 IPR000008 -
Cca03g01568 826 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 338 379 IPR001736 GO:0003824
Cca03g01568 826 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 6 165 IPR035892 -
Cca03g01568 826 Pfam Phospholipase D Active site motif 338 379 IPR001736 GO:0003824
Cca03g01568 826 Pfam Phospholipase D Active site motif 670 696 IPR001736 GO:0003824
Cca03g01568 826 SUPERFAMILY Phospholipase D/nuclease 515 743 - -
Cca03g01568 826 ProSiteProfiles C2 domain profile. 1 141 IPR000008 -
Cca03g01568 826 Gene3D C2 domain 54 174 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01568 Cca-Chr3 34419369 34423270 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01568 4 826 Phospholipase D Gene Family (Wang group) AT3G15730 63.241 0.0 1086
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01568 K01115 - gmx:100791688 1460.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01568 03 34419369 34423270 Cca03g01568 03 34419369 34423270 ECH