Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01566 ATGGTACAATCCAAGAAGTTCAGAGGAGTCAGGCAACGCCAGTGGGGCTCCTGGGTGTCAGAAATTCGCCACCCTTTATTGAAGAGAAGGGTGTGGCTAGGGACATTTGAGACAGCTGAGGCTGCAGCAAGGGCATATGACCAAGCAGCCATTTTGATGAATGGTCAGAATGCAAAGACGAATTTCCCCACTTCAAAGAACCAACCTGAAGAAGATCATGATGACACTTTCTTATCTCCGAAGGCTCTTTCAGAACTCCTCAGCACAAAGCTCAGGAAGTACTGCAAAGACCCTGCTCCATCCCTCACTTGTCTGAGGCTTGATGCTGACAATTCCCACATTGGAGTCTGGCAGAAAGGGGCAGGGCCACATTCTGGCTCCAACTGGGTCATGAGGGTTGAGCTCGGCAACAAACAAACCAAGGGTAGTGGTGAGTCTGTGGACTCGCCACTAAGTTGTGGTACTGATCATGGTGCTGGAAATGAGGTGGTGGAAGAAGAGGATAGAATTGCTTTGCAGATGATTGAAGAGTTACTCAATTGGAATTATCCTTGTGGCGCTTCAACTTCTTCTTAA 576 0.4826 MVQSKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAAILMNGQNAKTNFPTSKNQPEEDHDDTFLSPKALSELLSTKLRKYCKDPAPSLTCLRLDADNSHIGVWQKGAGPHSGSNWVMRVELGNKQTKGSGESVDSPLSCGTDHGAGNEVVEEEDRIALQMIEELLNWNYPCGASTSS 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01566 191 MobiDBLite consensus disorder prediction 139 159 - -
Cca03g01566 191 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Cca03g01566 191 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Cca03g01566 191 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 187 - -
Cca03g01566 191 SUPERFAMILY DNA-binding domain 6 65 IPR016177 GO:0003677
Cca03g01566 191 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR SHINE 2 1 187 - -
Cca03g01566 191 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Cca03g01566 191 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Cca03g01566 191 Pfam AP2 domain 6 55 IPR001471 GO:0003700|GO:0006355
Cca03g01566 191 CDD AP2 5 65 IPR001471 GO:0003700|GO:0006355
Cca03g01566 191 MobiDBLite consensus disorder prediction 58 77 - -
Cca03g01566 191 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01566 Cca-Chr3 34392103 34393364 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01566 1 190 AP2-EREBP Transcription Factor Family AT5G25390 61.979 7.48e-80 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca03g01566 AP2 1.6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01566 - - gmx:100806821 298.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01566 03 34392103 34393364 Cca03g01566 03 34392103 34393364 ECH
Cca03g01566 03 34392103 34393364 Cca05g00530 05 11992620 11994155 ECH
Cca11g02171 11 47583939 47585675 Cca03g01566 03 34392103 34393364 ECH