Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01561 ATGGGAGAAACAAAGGACGAAGCATACGAGGAAGAGCTTCTCGACTACGAGGAGGAAGAAGACAAGGCCCCCGATTCCGTCGGAGCCAAAGTCAACGGCGAAGCTACCAAGAAGGGATATGTTGGAATTCACAGCTCAGGATTTAGAGACTTTCTTTTGAAGCCGGAGCTGCTTCGCGCTATTGTGGACTCGGGTTTTGAGCATCCTTCCGAAGTGCAACACGAGTGCATACCTCAAGCTATTCTCGGAATGGATGTTATTTGTCAAGCCAAGTCTGGAATGGGAAAGACTGCTGTTTTTGTTCTCTCGACTTTGCAGCAGATTGATCCTGTTCCAGGCCAAGTTTCTGCACTTATTCTGTGTCATACAAGAGAATTGGCATATCAGATATGCCATGAGTTTGAAAGGTTTAGCACCTACTTACCCGATCTCAAGGTTGCTGTCTTTTATGGAGGGGTCAACATCAAAGTTCACAAGGATTTGCTGAAAAATGAATGTCCTCATATTGTTGTTGGAACACCGGGGAGAATACTTGCATTGACTAGGGAGAAGGACCTTTCTTTAAAGAATGTTCGACATTTCATATTGGATGAATGTGACAAGATGCTGGAATCCCTGGATATGAGGAAAGATGTTCAAGACATTTTCAAGATGACTCCTCATGACAAGCAAGTTATGATGTTCTCTGCCACGCTCAGCAAGGAAATACGTCCAGTCTGCAAGAAATTTATGCAAGATCCTATGGAAATTTATGTTGACGATGAGGCCAAGCTGACCCTTCATGGACTAGTGCAGCACTACATCAAATTAAAAGAGGAGGAGAAAAACCGAAAGTTGAATGATCTTCTGGATGCACTGGATTTTAACCAGGTTGTTATCTTTGTAAAAAGTGTTAGTAGAGCAGCCGAACTGGACAAACTACTTGTGGAGTGCAACTTTCCATCTATATGTATTCACTCGGGCATGTCCCAGGAAGAGAGGTTAAAGCGTTATAAAGGTTTCAAGGAGGGGCATACGAGGATTCTTGTTGCAACAGATTTGGTTGGAAGAGGGATTGACATTGAACGTGTCAATATTGTTATAAACTATGATATGCCTGATTCTGCAGACACATACTTGCACAGGGTTGGCCGAGCTGGAAGATTTGGCACCAAAGGCCTTGCAATCACCTTTGTTTCGTGTTCTACTGATGTCGATGTTCTCAACAATGTTCAATCAAGGTTTGAGGTGGATATAAAACAGCTCCCTGAGCAGATCGATACCTCTACCTATATGCCATCGTAG 1284 0.4346 MGETKDEAYEEELLDYEEEEDKAPDSVGAKVNGEATKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVPGQVSALILCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHKDLLKNECPHIVVGTPGRILALTREKDLSLKNVRHFILDECDKMLESLDMRKDVQDIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLKEEEKNRKLNDLLDALDFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEERLKRYKGFKEGHTRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCSTDVDVLNNVQSRFEVDIKQLPEQIDTSTYMPS 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01561 427 Gene3D - 259 426 IPR027417 -
Cca03g01561 427 Pfam DEAD/DEAH box helicase 71 236 IPR011545 GO:0003676|GO:0005524
Cca03g01561 427 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 46 74 IPR014014 GO:0003724
Cca03g01561 427 SMART helicmild6 302 383 IPR001650 -
Cca03g01561 427 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 27 422 - -
Cca03g01561 427 SMART ultradead3 65 266 IPR014001 -
Cca03g01561 427 Gene3D - 42 258 IPR027417 -
Cca03g01561 427 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 77 250 IPR014001 -
Cca03g01561 427 Pfam Helicase conserved C-terminal domain 276 383 IPR001650 -
Cca03g01561 427 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 115 397 IPR027417 -
Cca03g01561 427 MobiDBLite consensus disorder prediction 1 22 - -
Cca03g01561 427 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 262 423 IPR001650 -
Cca03g01561 427 CDD DEADc_DDX39 45 252 - -
Cca03g01561 427 CDD SF2_C_DEAD 263 392 - -
Cca03g01561 427 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 56-LIKE 27 422 - -
Cca03g01561 427 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01561 Cca-Chr3 34339852 34345598 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01561 1 427 Eukaryotic Initiation Factors Gene Family AT5G11200 83.369 0.0 760
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01561 K12812 - gmx:100808957 831.247
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01561 03 34339852 34345598 Cca03g01561 03 34339852 34345598 ECH