Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01556 ATGGCGGTTGCTTTTCGGTGTTTATCGTGTGCTCGGAGTGACCCTTTCCTCACTCTTCCTTTCCAACGGAAACCTCTCTTTTGCTCCGTTCCTCTTCCCTCTCGTGCTCGTAACCTCTGCTCTTCAATTGTTGCTGCCTCTTCCAAAAAGAAAAACAAGAAAAAATTGTCTCCTCATCATGTTACTGAGGTTGACGACGAGGATGAGGATGCATTTGAGCTGCTCTTCAAGCAACTCGAAGAAGATCTCAAACGCGATGGTTTATCAGAAGACGAAGATGAGATAACTGAAGAAGACATGGCATTGCTTGAACGTGAGTTGGAAAATGCATTGGGGGACTTTGATGCTGAACTGTTGAACTCCGATGTTATAGACATAGAAACTGGTAGCGACCCagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagatgatgatgatgatgatggtgataatgatgataatgataaagatgatggagatgaAAAGTCACTGAAGCTTAGGAACTGGCAGATGAAGAAATTAGCTAGAGCTTTAAAAGCTGGCCGCCGTAAAACAAGTATAAAAAATCTTGCTGCTGATCTTTGTCTTGATAGGGCTCTTGTTCTTCAATTGCTTCGTGAACCTCCTCCAAATCTTCTAATGATGAGTCTATCAATACCTGATGAACCCACAACAACCGTAGTATCACTTGAAACTAAGCCCAGAGAGATTGTTCATATCGAAACAAGTGTTGATCATGCAGAATCTGGACCCAAGGCTAAAGTACCTGTTCATACCTTGCAACGTAATTGGTATGCTCAAAAGAGATTGAAAAAGGCCCATGTTGACACTTTGGAGAGAGTTTATAGGAGATCAAAACGACCCACTAATGCAATGATCAGCAGCATTGTCCATGTAACAAACATTCCTCGAAAAAGAGTTGTCAAGTGGTTTGAAGACAAGCGTGCTGAGGAGGGAGTTCCAGATCGCCGTCTGCCTTACCAGCGCTCAGTTCCTGAAACTGCTTGA 1029 0.3907 MAVAFRCLSCARSDPFLTLPFQRKPLFCSVPLPSRARNLCSSIVAASSKKKNKKKLSPHHVTEVDDEDEDAFELLFKQLEEDLKRDGLSEDEDEITEEDMALLERELENALGDFDAELLNSDVIDIETGSDPEEEEEEEEEEEEEEEEEDDDDDDGDNDDNDKDDGDEKSLKLRNWQMKKLARALKAGRRKTSIKNLAADLCLDRALVLQLLREPPPNLLMMSLSIPDEPTTTVVSLETKPREIVHIETSVDHAESGPKAKVPVHTLQRNWYAQKRLKKAHVDTLERVYRRSKRPTNAMISSIVHVTNIPRKRVVKWFEDKRAEEGVPDRRLPYQRSVPETA 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01556 342 PANTHER HOMEOBOX PROTEIN 8 37 337 - -
Cca03g01556 342 Gene3D - 270 329 - -
Cca03g01556 342 CDD homeodomain 274 323 IPR001356 GO:0003677
Cca03g01556 342 Coils Coil 133 155 - -
Cca03g01556 342 SUPERFAMILY Homeodomain-like 270 332 IPR009057 -
Cca03g01556 342 MobiDBLite consensus disorder prediction 126 172 - -
Cca03g01556 342 Pfam Homeodomain 276 324 IPR001356 GO:0003677
Cca03g01556 342 ProSiteProfiles 'Homeobox' domain profile. 268 328 IPR001356 GO:0003677
Cca03g01556 342 SMART HOX_1 274 332 IPR001356 GO:0003677
Cca03g01556 342 MobiDBLite consensus disorder prediction 127 164 - -
Cca03g01556 342 PANTHER ZINC-FINGERS AND HOMEOBOXES RELATED 37 337 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Cca03g01556 Homeodomain 6.1e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01556 - - ccaj:109796293 586.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01556 03 34276307 34279881 Cca03g01556 03 34276307 34279881 ECH