Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01548 ATGACAAAGAAGAAAAATTCCCTGGTGTTTATGGATGTGTCCATCGACGGGGATCCTGTTGAAAGGATGGTTTTTGAGCTTTTCTATGATGTTGCACCCAAGACTGCAGAAAACTTTCGTGCATTATGTACAGGAGAAAGAGGTATTGGTCCAAATACCGGAAAATCACTGCACTACAAGGGTTCTTTCTTCCATCAGATTGTAAAAGGTTCCATTGTGCAGGGTGGAGATTTTGTCAATCGAAATGGGACTGGTGGAGAAAGCATATATGGTTCAAAATTCCCAGATGAGCCACCTAGGCTGAAGCATGATGCTCCTGGCCTTTTATCAATGGCAATAGCAGACCGTGACACTCTTGGTTCTCATTTTATTATCACTTTGAAAGCTGATCATAATCTTGATAGGAAGCATGTTGTCTTTGGGAAGCTTGTGCATGGGCATAATGTATTGAAGAAAATTGAAGACGTGGGTGATGAAGAAGGGCATCCAACTGTAACTGTTAAAATCATTTATTGTGGTGAATATAGCGAGGATGGGAAGAAGGTAAATAAATCAAAAATGGGAAGGGATGGATCTTCTGAAGCCAACAGTCATGAAACACGGAAGAAGGGAAAGAATAAAAAATCCTCAAAAGACCGAAGGAAAAGGAGAAGATACTACTCATCTGTATCGGGGAGCTCttcagattctgacacggaatcttcagaaactgatagtgattctgagtctgatATATCTTCATCATCTTACTTGAGTTCTTCTAGTGATGACAGGCGAAGGAAGAGAAAGAGATCTAAGAAAGATAAATATAAAAGGGGAAAAAGAAGAGATAAACGCCGTGACAAGAAGCGAAGGAGAAGGGATAAGAGATCGAAGCGGAAATCAAAAAGGGAATCGGTCAGTGGTTCAGATAGTGAGAGTAGCAGTGACAGTAGCTCTGAAGGTGAAGGTATTGTTGCTCAACATAAAGGGCCAAAGCGTAAAGATCATTCTCAAAAAACTGCTGAAATAAAGTCTCCCTTGGTTGAGAAAGATTTGTCTCCTGGGCATCATAAAAAGGATGAAGTGGTTATGCCAGGGAAAGGGGAAAATTTCTCGAAGGAAAATGGAGAGCGACACAGCAATGGCATTGGAGGAGCTGACTACGAATCTGACAGAAGTGCAGAGAGGCAGCCTGACGTTATGGATGATCATTCGGGCAAAACTAGGAGTCGAAGCGTGAGTCCTAAGCGATCCATgagtaagagtatgagtattagtcccaggaggagtgagagcaagagCCCAAGTGTCACTCCTAAAAGGAGATTGAGCAAAAGTCCAAGTGTTAGTAGAAGCCCTCCTCAATCACGGAGGAGTTTGAGCAGAAGTCCTGCTAGAAGCATCAGTAGGAGCCCAAGCAGAAGCATCAGTAGAAGCCCAGTGAGAGGCAGGAAGGGGAGAAGCGTCAGTAGAAGCCCTGTGAGAACTCGTTCTCGTAGAAGTATCAGCAAGAGCCCTGTAAGATCCCATTCTCAAAGCCACCGAAGCAGGAGTTCTCCCAGAGCATCTTCAAGAAAAACAATCAGCAGAAGCCCTGTACGAGTGTTGGAAAAGAGTGTAAGCCGCAGTCCAGTTAGATCACCTGCAAGAAGTTTAAGCAGAAGCTCTGGTAGAGTTCCCTCAAAGAGAAGCATCAGCCGAAGCCCAATCAGAGCACCTAGTAGAAGCAATCGCCGCAGCTATTCTAGGAGTCCTAGCCCTGTTCGTAGGACAAGGACACCTCGTGGGAGGAGTGTTTCAAGGAGTGCCTCACCTGATGCTTCACCAAAGCGTATCAGAAGGGGAAGAGGTTTCAGTGAACGATACTCTTATGCAAGAAGGTACAGAACCCCCTCTCGGTCTCCTGTGAGGTCTTACCGCTACAATGGAAGAAGTGACCGAGACAGATATTCTAGTTACAGAAGGTATTCCCCTAGGCGTTTCAGGAGCCCACCACCACGTGGAAGGACTCCCCCAAGGTATCGAAACAGGAGGAGCAGGACGCCATCTGTTTCACGCAGTCCACGATATCGAGCTCGACGATATAGCCGAAGTAGAAGCCCAGTTCGAAGTAGGAGCCCAGTTCGTAGTCGTTCACCGGTTGAAACATATCGATCACGGCCCTCTCCTCGTGTGGAGAGGCATGCATCTTCTTCTCGGAGCAGGAGCCCATCGAGGTCCAGGTCCAGGTCCAGATCTTCTGTTGAATCTCCACCAAGAGCTAGTAGAGACAGCAGGTCCAGATCATCGTCCAGAAGTCCAGATGGAAAGAAAGGCCTGGTCTCTTATGGCGATGCTTCTCCATACTCGGGTCAAAGGTGA 2343 0.4447 MTKKKNSLVFMDVSIDGDPVERMVFELFYDVAPKTAENFRALCTGERGIGPNTGKSLHYKGSFFHQIVKGSIVQGGDFVNRNGTGGESIYGSKFPDEPPRLKHDAPGLLSMAIADRDTLGSHFIITLKADHNLDRKHVVFGKLVHGHNVLKKIEDVGDEEGHPTVTVKIIYCGEYSEDGKKVNKSKMGRDGSSEANSHETRKKGKNKKSSKDRRKRRRYYSSVSGSSSDSDTESSETDSDSESDISSSSYLSSSSDDRRRKRKRSKKDKYKRGKRRDKRRDKKRRRRDKRSKRKSKRESVSGSDSESSSDSSSEGEGIVAQHKGPKRKDHSQKTAEIKSPLVEKDLSPGHHKKDEVVMPGKGENFSKENGERHSNGIGGADYESDRSAERQPDVMDDHSGKTRSRSVSPKRSMSKSMSISPRRSESKSPSVTPKRRLSKSPSVSRSPPQSRRSLSRSPARSISRSPSRSISRSPVRGRKGRSVSRSPVRTRSRRSISKSPVRSHSQSHRSRSSPRASSRKTISRSPVRVLEKSVSRSPVRSPARSLSRSSGRVPSKRSISRSPIRAPSRSNRRSYSRSPSPVRRTRTPRGRSVSRSASPDASPKRIRRGRGFSERYSYARRYRTPSRSPVRSYRYNGRSDRDRYSSYRRYSPRRFRSPPPRGRTPPRYRNRRSRTPSVSRSPRYRARRYSRSRSPVRSRSPVRSRSPVETYRSRPSPRVERHASSSRSRSPSRSRSRSRSSVESPPRASRDSRSRSSSRSPDGKKGLVSYGDASPYSGQR 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01548 780 Gene3D - 1 175 IPR029000 -
Cca03g01548 780 SUPERFAMILY Cyclophilin-like 4 176 IPR029000 -
Cca03g01548 780 MobiDBLite consensus disorder prediction 744 760 - -
Cca03g01548 780 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 10 174 IPR002130 GO:0000413|GO:0003755
Cca03g01548 780 MobiDBLite consensus disorder prediction 180 201 - -
Cca03g01548 780 MobiDBLite consensus disorder prediction 695 711 - -
Cca03g01548 780 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP95 1 481 - -
Cca03g01548 780 MobiDBLite consensus disorder prediction 320 370 - -
Cca03g01548 780 MobiDBLite consensus disorder prediction 406 472 - -
Cca03g01548 780 MobiDBLite consensus disorder prediction 474 515 - -
Cca03g01548 780 MobiDBLite consensus disorder prediction 729 743 - -
Cca03g01548 780 MobiDBLite consensus disorder prediction 634 649 - -
Cca03g01548 780 MobiDBLite consensus disorder prediction 538 599 - -
Cca03g01548 780 MobiDBLite consensus disorder prediction 202 220 - -
Cca03g01548 780 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 1 481 - -
Cca03g01548 780 MobiDBLite consensus disorder prediction 180 780 - -
Cca03g01548 780 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 27 42 IPR002130 GO:0000413|GO:0003755
Cca03g01548 780 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 64 76 IPR002130 GO:0000413|GO:0003755
Cca03g01548 780 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 107 122 IPR002130 GO:0000413|GO:0003755
Cca03g01548 780 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 135 150 IPR002130 GO:0000413|GO:0003755
Cca03g01548 780 MobiDBLite consensus disorder prediction 383 404 - -
Cca03g01548 780 MobiDBLite consensus disorder prediction 516 530 - -
Cca03g01548 780 MobiDBLite consensus disorder prediction 601 621 - -
Cca03g01548 780 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 11 173 IPR002130 GO:0000413|GO:0003755
Cca03g01548 780 MobiDBLite consensus disorder prediction 259 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01548 Cca-Chr3 34198833 34205050 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01548 25 170 U-box Gene Family AT5G67530 40.541 3.45e-21 96.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01548 K09566 - gmx:100800303 364.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01548 03 34198833 34205050 Cca03g01548 03 34198833 34205050 ECH