Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01540 ATGTGGCTACTCAAATCGCTTAAATCCCCTTGGCGTCGTTTTGGAGGACCTGATTTGCGTTTCCAATTCCAACTCCGTTTTGTTCCCCTACTCTCTCATCCTCTGCCTCGAGGAAATGTACATTGTTCTCACAAGATTAAAACGCTAATTGAAGATTGCTCCAATGGAAGAAGTAAGTTCAATCTACTCGTGCAAATCGAAACCGTCGTTGACACCTTCCACAGGCTCAGCAGAGAACTCTCCACGCTCCTCGATGTTTTCCCTCTCCAAGAACTCCACCTAAACGACCAAATCAAGCACGAGATCGTTCCCGATCAAGCGCATCTCTCTTTAATTTTTGACAAACTAGAGATTCGCGACGCGTCCAGCTACAGAGCGGAGATTGAGAGTCTCAAGGAAGAAATTGTCAATCGGAGCGAGGAACAATCCAAAACGGACCTTGTCACGTTTATCCACCTTGTGGATTatttttaa 474 0.4536 MWLLKSLKSPWRRFGGPDLRFQFQLRFVPLLSHPLPRGNVHCSHKIKTLIEDCSNGRSKFNLLVQIETVVDTFHRLSRELSTLLDVFPLQELHLNDQIKHEIVPDQAHLSLIFDKLEIRDASSYRAEIESLKEEIVNRSEEQSKTDLVTFIHLVDYF 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01540 157 PANTHER U BOX DOMAIN-CONTAINING 44 99 - -
Cca03g01540 157 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 16 94 156 - -
Cca03g01540 157 Coils Coil 121 141 - -
Cca03g01540 157 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 16 44 99 - -
Cca03g01540 157 PANTHER U BOX DOMAIN-CONTAINING 94 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01540 Cca-Chr3 34095443 34096381 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01540 44 156 U-box Gene Family AT5G01830 32.886 3.14e-17 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01540 - - ccaj:109792769 146.362