Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01539 ATGCCGACGCGTGCCATGGCCATGTTACCAAGATTGTGTGGCAGCCACGACGAGGGGATGGATGACCAGGAACACAGAAATCGCATTGAGTTTGATCAAAGGTCCATGGACGACGCCAGCCAATACAGCCTCCAGGGCATTCCGCTCCCTTCCCTCGGCGCCACCGCAGTCCCCAGCTGTCGGAGGACCAATCTCCGTCCATACATTGTCTCGCCCTACACCCATTATTACAAATTGTGGGAGAATTTTCTGGTGTTCTTAGTTTTCTACACTGCATGGGTTTGCCCTTTTGAGTTTGGCTTCCTTAATAAACCGAAGGATCACCTTTCCATTGCTGACAATGTGGTGAATGCGTTTTTTGCCGTTGACATTGTTCTCACCTTCTTTGTTGCCTACCTGGACAAGGTTTCATATCTGCTCGTGGACCAACCAAAGCTCATTGCCTTGAGATATGCCAAAACATGGCTTGCATTTGATGTCATTTCTACCATCCCTTCTGAACTTGCCCACAAAGTGTTGCCCGGTCCTCTTAAGACATATGGCTACTTCAATATACTCCGTCTTTGGCGCCTCCGTAGAGTTAGTGCCATGTTTGCAAGATTAGAAAAGGACAGAAATTTTAACTACTTCTGGGTGCGCTGTTCAAAGCTTATATGTGTTACTCTATTTTCAGTGCATTTTGCTGCCTGCTTTTACTATTTTCTTGCGCTAAATCATGAACAACGATCAACATGGCTTAGCTTGGCTACTGAACTCTCTCAAGACAATCTTTGGAGTCTCTACGTAACATCAATGTACTGGTCCATATCGACTCTTTCATCAGTCGGTTATGGTGATCTGCATCCAGTAAATACCAAGGAGATGGTATTTGACATAATATACATGCTCTTTAACCTGGGACTAACGTCATATCTAATCGGAAACATGACAAACTTGGTTGTTCATGGGACAAGCAGAACTAGGAAATATAGAGACACGGTGCAAGCTGCCACAGGTTTTGCCCATCGGAATCAGTTACCTATCCGCTTGCAAGAACAGATGCTTGCTCATTTGTCTATGAAGTACAGAACTGATTTAGAAGGATTGCAACAACAAGAAATTATTGAATCCCTTCCAAAGGCTATTCGGTCTAGCATCTCACACTACTTATTCTATTCACTGGTAGACAAATTGTATTTGTTTCGTGGAGTGTCAAGTGACCTACTCTTTCAACTGGTTACGGATATGAAGGCCGAGTATTTTCCTCCAAAGGAAGATGTGATTTTGCAGAATGAAGCGCCAACAGACTTTTATATCTTTGTTACCGGTGCTGCAGAAGTTATCACTATAAATAATGGAATGGAACAGGTCGTTGGTGAGGTAGTGTCAGGAGACGTAGTTGGAGAAATAGGAGTTTTATGTTACAGGCCACAGGTGTTTACAATTCGAACCAAACGACTGAGCCAAATTCTTCGCTTGAACCGTACTACATTTCTAAATATTGTTCATTCAACGCTTGGAGATGGGACAATAATCGTGAACAATTTTCTCCAGCATCTGAAAGAATCGAGGTATACAGGGATGGATGTTATTTTGGCAGAAACGGAGGCCATGATTGCTCGAGGCAGAATGGATATGCCCATTACCACATGCTTTGCAGCAGGCAGAAATGATGATCTATTGTTACGTCGTTTGCTTGAGAAGGGTTCTGATCCAAATGAAGAGAATAAGGACGGACAGACAGCACTGCATATTGCAGCTTCCAAAGGCAATAAACATTGTGTAACTTTGCTTCTAGAACATGGTGCTGATCCCAATAGCAAAGATAAGGACGGAAATGTACCACTGTGGGAAGCAATTAAGGGGAGGCATGAATCTGTCATCAAACTTCTAATAAACAATGGTGCAGACATATCTTCTGCTGATGCAGGCAATCTAGCGTGCACTGCTGTTGAGCAAAATGACATAGAATTGCTCAAGGAATTAATTCAGTGTGGTGCGGATGTGACACAACCCCAAAAGAATGGAACCACTGCTCTGCATATGGCAGCACTTTATGGAAACGCTGAGCTGATTAGGTTCCTTATAGACCAAGGAGCAGACATTGACAAGCAAGATGCTGATGGGTGCACTCCCAGGGATTTTGCAGAAAAACATGAGCATGAAGAAATTAAAACTATATTCCACAACATTGGAGAGAGCAGAATATCAAAGAGTGACGGCATTAGGAGCTTTCAAAGTGATCCCAGCATGCTTGCTATTTCCCAAGAAAGCATGTCACTGCCATCTACTCAAGAGTCGACTTGGCTTGATAATGGGAGAGGGTCTTCCAGCTCTTATCATAATTCCATTTTTGGAATGATCTCAAAAGCCAATCGTGATAGAAGACATCGCCAGACATATGAAAGCAGTAACATTAGTAAAGTTAATGTGAATGAATCAATCAGAGTGACAATTAGTTGTCCAGAAAAAGGTGAACATGCTAGAAAACTTGTTTTGCTGCCCAAGTCCCTTGAAGAGCTGCTAGATATTGGTGCCAGAAAGTTTGATATATCTGTCACCAAAATTGTGACCGCAGATAGAGCTGAAGTTGACGATTTAAATCTTATAAGAGATGGTGATCATCTTATTATTACCGGGGAAACAATAATTGATTCCTAA 2640 0.4265 MPTRAMAMLPRLCGSHDEGMDDQEHRNRIEFDQRSMDDASQYSLQGIPLPSLGATAVPSCRRTNLRPYIVSPYTHYYKLWENFLVFLVFYTAWVCPFEFGFLNKPKDHLSIADNVVNAFFAVDIVLTFFVAYLDKVSYLLVDQPKLIALRYAKTWLAFDVISTIPSELAHKVLPGPLKTYGYFNILRLWRLRRVSAMFARLEKDRNFNYFWVRCSKLICVTLFSVHFAACFYYFLALNHEQRSTWLSLATELSQDNLWSLYVTSMYWSISTLSSVGYGDLHPVNTKEMVFDIIYMLFNLGLTSYLIGNMTNLVVHGTSRTRKYRDTVQAATGFAHRNQLPIRLQEQMLAHLSMKYRTDLEGLQQQEIIESLPKAIRSSISHYLFYSLVDKLYLFRGVSSDLLFQLVTDMKAEYFPPKEDVILQNEAPTDFYIFVTGAAEVITINNGMEQVVGEVVSGDVVGEIGVLCYRPQVFTIRTKRLSQILRLNRTTFLNIVHSTLGDGTIIVNNFLQHLKESRYTGMDVILAETEAMIARGRMDMPITTCFAAGRNDDLLLRRLLEKGSDPNEENKDGQTALHIAASKGNKHCVTLLLEHGADPNSKDKDGNVPLWEAIKGRHESVIKLLINNGADISSADAGNLACTAVEQNDIELLKELIQCGADVTQPQKNGTTALHMAALYGNAELIRFLIDQGADIDKQDADGCTPRDFAEKHEHEEIKTIFHNIGESRISKSDGIRSFQSDPSMLAISQESMSLPSTQESTWLDNGRGSSSSYHNSIFGMISKANRDRRHRQTYESSNISKVNVNESIRVTISCPEKGEHARKLVLLPKSLEELLDIGARKFDISVTKIVTADRAEVDDLNLIRDGDHLIITGETIIDS 879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01539 879 PRINTS Ankyrin repeat signature 572 587 IPR002110 GO:0005515
Cca03g01539 879 PRINTS Ankyrin repeat signature 620 634 IPR002110 GO:0005515
Cca03g01539 879 Pfam Cyclic nucleotide-binding domain 413 496 IPR000595 -
Cca03g01539 879 Pfam KHA, dimerisation domain of potassium ion channel 809 871 IPR021789 -
Cca03g01539 879 Gene3D Jelly Rolls 359 522 IPR014710 -
Cca03g01539 879 Pfam Ankyrin repeats (many copies) 655 709 IPR002110 GO:0005515
Cca03g01539 879 Pfam Ankyrin repeats (3 copies) 546 634 IPR002110 GO:0005515
Cca03g01539 879 PRINTS EAG/ELK/ERG potassium channel family signature 90 97 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cca03g01539 879 PRINTS EAG/ELK/ERG potassium channel family signature 113 123 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cca03g01539 879 PRINTS EAG/ELK/ERG potassium channel family signature 124 133 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cca03g01539 879 PRINTS EAG/ELK/ERG potassium channel family signature 261 278 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cca03g01539 879 PRINTS EAG/ELK/ERG potassium channel family signature 287 298 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cca03g01539 879 PRINTS EAG/ELK/ERG potassium channel family signature 305 314 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cca03g01539 879 Pfam Ion transport protein 78 320 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cca03g01539 879 Gene3D - 540 723 IPR036770 -
Cca03g01539 879 ProSiteProfiles cAMP/cGMP binding motif profile. 393 512 IPR000595 -
Cca03g01539 879 PANTHER POTASSIUM CHANNEL AKT1 6 873 IPR045319 GO:0005249|GO:0006813
Cca03g01539 879 ProSiteProfiles Ankyrin repeat region circular profile. 571 603 - -
Cca03g01539 879 CDD CAP_ED 393 496 IPR000595 -
Cca03g01539 879 ProSiteProfiles Ankyrin repeat profile. 668 700 IPR002110 GO:0005515
Cca03g01539 879 ProSiteProfiles Ankyrin repeat region circular profile. 604 635 - -
Cca03g01539 879 ProSiteProfiles Ankyrin repeat region circular profile. 668 699 - -
Cca03g01539 879 SMART ANK_2a 635 664 IPR002110 GO:0005515
Cca03g01539 879 SMART ANK_2a 668 697 IPR002110 GO:0005515
Cca03g01539 879 SMART ANK_2a 536 567 IPR002110 GO:0005515
Cca03g01539 879 SMART ANK_2a 571 600 IPR002110 GO:0005515
Cca03g01539 879 SMART ANK_2a 604 633 IPR002110 GO:0005515
Cca03g01539 879 ProSiteProfiles Ankyrin repeat profile. 604 636 IPR002110 GO:0005515
Cca03g01539 879 ProSiteProfiles KHA domain profile. 809 879 IPR021789 -
Cca03g01539 879 SUPERFAMILY Voltage-gated potassium channels 72 314 - -
Cca03g01539 879 SMART cnmp_10 393 510 IPR000595 -
Cca03g01539 879 ProSiteProfiles Ankyrin repeat profile. 571 603 IPR002110 GO:0005515
Cca03g01539 879 PANTHER INWARDLY RECTIFYING POTASSIUM CHANNEL SUBUNIT 6 873 - -
Cca03g01539 879 Gene3D - 79 314 - -
Cca03g01539 879 SUPERFAMILY cAMP-binding domain-like 318 513 IPR018490 -
Cca03g01539 879 SUPERFAMILY Ankyrin repeat 545 725 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01539 Cca-Chr3 34084149 34090950 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01539 40 872 Ion Channels AT2G25600 57.820 0.0 964
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01539 K21867 - gmx:100802964 1281.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01539 03 34084149 34090950 Cca03g01539 03 34084149 34090950 ECH