LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca03g01539	ATGCCGACGCGTGCCATGGCCATGTTACCAAGATTGTGTGGCAGCCACGACGAGGGGATGGATGACCAGGAACACAGAAATCGCATTGAGTTTGATCAAAGGTCCATGGACGACGCCAGCCAATACAGCCTCCAGGGCATTCCGCTCCCTTCCCTCGGCGCCACCGCAGTCCCCAGCTGTCGGAGGACCAATCTCCGTCCATACATTGTCTCGCCCTACACCCATTATTACAAATTGTGGGAGAATTTTCTGGTGTTCTTAGTTTTCTACACTGCATGGGTTTGCCCTTTTGAGTTTGGCTTCCTTAATAAACCGAAGGATCACCTTTCCATTGCTGACAATGTGGTGAATGCGTTTTTTGCCGTTGACATTGTTCTCACCTTCTTTGTTGCCTACCTGGACAAGGTTTCATATCTGCTCGTGGACCAACCAAAGCTCATTGCCTTGAGATATGCCAAAACATGGCTTGCATTTGATGTCATTTCTACCATCCCTTCTGAACTTGCCCACAAAGTGTTGCCCGGTCCTCTTAAGACATATGGCTACTTCAATATACTCCGTCTTTGGCGCCTCCGTAGAGTTAGTGCCATGTTTGCAAGATTAGAAAAGGACAGAAATTTTAACTACTTCTGGGTGCGCTGTTCAAAGCTTATATGTGTTACTCTATTTTCAGTGCATTTTGCTGCCTGCTTTTACTATTTTCTTGCGCTAAATCATGAACAACGATCAACATGGCTTAGCTTGGCTACTGAACTCTCTCAAGACAATCTTTGGAGTCTCTACGTAACATCAATGTACTGGTCCATATCGACTCTTTCATCAGTCGGTTATGGTGATCTGCATCCAGTAAATACCAAGGAGATGGTATTTGACATAATATACATGCTCTTTAACCTGGGACTAACGTCATATCTAATCGGAAACATGACAAACTTGGTTGTTCATGGGACAAGCAGAACTAGGAAATATAGAGACACGGTGCAAGCTGCCACAGGTTTTGCCCATCGGAATCAGTTACCTATCCGCTTGCAAGAACAGATGCTTGCTCATTTGTCTATGAAGTACAGAACTGATTTAGAAGGATTGCAACAACAAGAAATTATTGAATCCCTTCCAAAGGCTATTCGGTCTAGCATCTCACACTACTTATTCTATTCACTGGTAGACAAATTGTATTTGTTTCGTGGAGTGTCAAGTGACCTACTCTTTCAACTGGTTACGGATATGAAGGCCGAGTATTTTCCTCCAAAGGAAGATGTGATTTTGCAGAATGAAGCGCCAACAGACTTTTATATCTTTGTTACCGGTGCTGCAGAAGTTATCACTATAAATAATGGAATGGAACAGGTCGTTGGTGAGGTAGTGTCAGGAGACGTAGTTGGAGAAATAGGAGTTTTATGTTACAGGCCACAGGTGTTTACAATTCGAACCAAACGACTGAGCCAAATTCTTCGCTTGAACCGTACTACATTTCTAAATATTGTTCATTCAACGCTTGGAGATGGGACAATAATCGTGAACAATTTTCTCCAGCATCTGAAAGAATCGAGGTATACAGGGATGGATGTTATTTTGGCAGAAACGGAGGCCATGATTGCTCGAGGCAGAATGGATATGCCCATTACCACATGCTTTGCAGCAGGCAGAAATGATGATCTATTGTTACGTCGTTTGCTTGAGAAGGGTTCTGATCCAAATGAAGAGAATAAGGACGGACAGACAGCACTGCATATTGCAGCTTCCAAAGGCAATAAACATTGTGTAACTTTGCTTCTAGAACATGGTGCTGATCCCAATAGCAAAGATAAGGACGGAAATGTACCACTGTGGGAAGCAATTAAGGGGAGGCATGAATCTGTCATCAAACTTCTAATAAACAATGGTGCAGACATATCTTCTGCTGATGCAGGCAATCTAGCGTGCACTGCTGTTGAGCAAAATGACATAGAATTGCTCAAGGAATTAATTCAGTGTGGTGCGGATGTGACACAACCCCAAAAGAATGGAACCACTGCTCTGCATATGGCAGCACTTTATGGAAACGCTGAGCTGATTAGGTTCCTTATAGACCAAGGAGCAGACATTGACAAGCAAGATGCTGATGGGTGCACTCCCAGGGATTTTGCAGAAAAACATGAGCATGAAGAAATTAAAACTATATTCCACAACATTGGAGAGAGCAGAATATCAAAGAGTGACGGCATTAGGAGCTTTCAAAGTGATCCCAGCATGCTTGCTATTTCCCAAGAAAGCATGTCACTGCCATCTACTCAAGAGTCGACTTGGCTTGATAATGGGAGAGGGTCTTCCAGCTCTTATCATAATTCCATTTTTGGAATGATCTCAAAAGCCAATCGTGATAGAAGACATCGCCAGACATATGAAAGCAGTAACATTAGTAAAGTTAATGTGAATGAATCAATCAGAGTGACAATTAGTTGTCCAGAAAAAGGTGAACATGCTAGAAAACTTGTTTTGCTGCCCAAGTCCCTTGAAGAGCTGCTAGATATTGGTGCCAGAAAGTTTGATATATCTGTCACCAAAATTGTGACCGCAGATAGAGCTGAAGTTGACGATTTAAATCTTATAAGAGATGGTGATCATCTTATTATTACCGGGGAAACAATAATTGATTCCTAA	2640	0.4265	MPTRAMAMLPRLCGSHDEGMDDQEHRNRIEFDQRSMDDASQYSLQGIPLPSLGATAVPSCRRTNLRPYIVSPYTHYYKLWENFLVFLVFYTAWVCPFEFGFLNKPKDHLSIADNVVNAFFAVDIVLTFFVAYLDKVSYLLVDQPKLIALRYAKTWLAFDVISTIPSELAHKVLPGPLKTYGYFNILRLWRLRRVSAMFARLEKDRNFNYFWVRCSKLICVTLFSVHFAACFYYFLALNHEQRSTWLSLATELSQDNLWSLYVTSMYWSISTLSSVGYGDLHPVNTKEMVFDIIYMLFNLGLTSYLIGNMTNLVVHGTSRTRKYRDTVQAATGFAHRNQLPIRLQEQMLAHLSMKYRTDLEGLQQQEIIESLPKAIRSSISHYLFYSLVDKLYLFRGVSSDLLFQLVTDMKAEYFPPKEDVILQNEAPTDFYIFVTGAAEVITINNGMEQVVGEVVSGDVVGEIGVLCYRPQVFTIRTKRLSQILRLNRTTFLNIVHSTLGDGTIIVNNFLQHLKESRYTGMDVILAETEAMIARGRMDMPITTCFAAGRNDDLLLRRLLEKGSDPNEENKDGQTALHIAASKGNKHCVTLLLEHGADPNSKDKDGNVPLWEAIKGRHESVIKLLINNGADISSADAGNLACTAVEQNDIELLKELIQCGADVTQPQKNGTTALHMAALYGNAELIRFLIDQGADIDKQDADGCTPRDFAEKHEHEEIKTIFHNIGESRISKSDGIRSFQSDPSMLAISQESMSLPSTQESTWLDNGRGSSSSYHNSIFGMISKANRDRRHRQTYESSNISKVNVNESIRVTISCPEKGEHARKLVLLPKSLEELLDIGARKFDISVTKIVTADRAEVDDLNLIRDGDHLIITGETIIDS	879

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca03g01539	879	PRINTS	Ankyrin repeat signature	572	587	IPR002110	GO:0005515
	Cca03g01539	879	PRINTS	Ankyrin repeat signature	620	634	IPR002110	GO:0005515
	Cca03g01539	879	Pfam	Cyclic nucleotide-binding domain	413	496	IPR000595	-
	Cca03g01539	879	Pfam	KHA, dimerisation domain of potassium ion channel	809	871	IPR021789	-
	Cca03g01539	879	Gene3D	Jelly Rolls	359	522	IPR014710	-
	Cca03g01539	879	Pfam	Ankyrin repeats (many copies)	655	709	IPR002110	GO:0005515
	Cca03g01539	879	Pfam	Ankyrin repeats (3 copies)	546	634	IPR002110	GO:0005515
	Cca03g01539	879	PRINTS	EAG/ELK/ERG potassium channel family signature	90	97	IPR003938	GO:0005249\|GO:0006813\|GO:0016020
	Cca03g01539	879	PRINTS	EAG/ELK/ERG potassium channel family signature	113	123	IPR003938	GO:0005249\|GO:0006813\|GO:0016020
	Cca03g01539	879	PRINTS	EAG/ELK/ERG potassium channel family signature	124	133	IPR003938	GO:0005249\|GO:0006813\|GO:0016020

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca03g01539	Cca-Chr3	34084149	34090950	Proximal

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca03g01539	40	872	Ion Channels	AT2G25600	57.820	0.0	964

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca03g01539	K21867		-	gmx:100802964	1281.16

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Cca03g01539	03	34084149	34090950	Cca03g01539	03	34084149	34090950	ECH

Showing 1 to 1 of 1 entries