Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01537 ATGGTGAATGCGTTTTTTGCCGTTGACATTTTTCTCACCTTCTTTGTTGCCTACCTGGACAAGGCTTCATATCTGCTCGTGGACCAAGCAAAGCTCATTGCCTTGAGATATGCCAAAACAAGGCTTGCATTAGATGTCATTTCTACCATCCCTTCTGAATTGCCCGCAAAGTGTTGCCCGATCCTCTTAAGACATATGGCTACTTCAATATGCTCCGTCTTTGGCGCCTCCGTAGAGTTAGTGCCATGTTTGCAAGGAAATTGTCTTGCATTTGTTACTCTATTTTCAGTGCATTTTGCTGCCTGCTTTTACTATTTTCTTGCGCTAAATCATGAACACCAATCAACATGGCTTAGCTTGGCTACTGAACTATCTCAAGATAATCTTTGGAGTCTCGACGTAACATCAATGTACTGGTCCATAGTGACTTTTTCAACCATCAGTTATGGTGACCTGCATCCTGTTACGGATATGAAGGCCGAGTATTTTCCCCCAAAGGAAGATGTGATTTTGCGGAATGAAGCGCCAACAGACTTTTATAACTTTGTCACCGGTGCTGCAGTCGCTGGTGAGGTAGAGTTAGAAGACCTAGTTGGAGAAATAGGAGTTTTATGTTACAGGCCACAGGTGTTTACAATTCGAACCAAACAATTGATCCAAATTCTAAGCTTGAACCGTACTACATTTCTAAATATTGTTCATTCAACACTTGGAGATGGGACAATAATCATGAGCAATTTTGCTCCAGAAACGGAGGCCATGATTGCTCAGGGCAGAATGGATATGCCCATTACCACATGCTTTGCAACTGGCAGAAATGATGATCTATTATTACGTCGTTTGCTTGAGAAAGGTTCTGATCCAAATGAAGAGAATAAGGACAGACAGACAGCACTATATATTGCAGCTTCCAGAGGCAATAAACATTGTGTCACTTTGCTTCTAGAACATGGTGTTGATCCCAATAGCAAAGGCAATCTAGCGTGCACTGCTGTTGAGCAAAATGACATAGAATTGCTCAAGGAATTATTTCAGGGTGTGGATGTGATACATCCCCAAAAGAATGGAACCACTGCTCTGCATATGGAAGCACTTTATGGAAACGCTGAGCTGATTAGGTTCCTTGTAACCAAGGAGTAG 1140 0.4219 MVNAFFAVDIFLTFFVAYLDKASYLLVDQAKLIALRYAKTRLALDVISTIPSELPAKCCPILLRHMATSICSVFGASVELVPCLQGNCLAFVTLFSVHFAACFYYFLALNHEHQSTWLSLATELSQDNLWSLDVTSMYWSIVTFSTISYGDLHPVTDMKAEYFPPKEDVILRNEAPTDFYNFVTGAAVAGEVELEDLVGEIGVLCYRPQVFTIRTKQLIQILSLNRTTFLNIVHSTLGDGTIIMSNFAPETEAMIAQGRMDMPITTCFATGRNDDLLLRRLLEKGSDPNEENKDRQTALYIAASRGNKHCVTLLLEHGVDPNSKGNLACTAVEQNDIELLKELFQGVDVIHPQKNGTTALHMEALYGNAELIRFLVTKE 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01537 379 Gene3D - 1 162 - -
Cca03g01537 379 PANTHER INWARDLY RECTIFYING POTASSIUM CHANNEL SUBUNIT 155 324 - -
Cca03g01537 379 SUPERFAMILY cAMP-binding domain-like 157 237 IPR018490 -
Cca03g01537 379 ProSiteProfiles Ankyrin repeat region circular profile. 355 379 - -
Cca03g01537 379 Pfam Ankyrin repeats (3 copies) 273 348 IPR002110 GO:0005515
Cca03g01537 379 SMART ANK_2a 355 379 IPR002110 GO:0005515
Cca03g01537 379 SMART ANK_2a 294 323 IPR002110 GO:0005515
Cca03g01537 379 SMART ANK_2a 259 290 IPR002110 GO:0005515
Cca03g01537 379 SUPERFAMILY Ankyrin repeat 268 377 IPR036770 -
Cca03g01537 379 ProSiteProfiles cAMP/cGMP binding motif profile. 155 233 IPR000595 -
Cca03g01537 379 PANTHER INWARDLY RECTIFYING POTASSIUM CHANNEL SUBUNIT 2 155 - -
Cca03g01537 379 Gene3D - 263 379 IPR036770 -
Cca03g01537 379 ProSiteProfiles Ankyrin repeat region circular profile. 294 322 - -
Cca03g01537 379 PANTHER INWARDLY RECTIFYING POTASSIUM CHANNEL SUBUNIT 325 377 - -
Cca03g01537 379 SUPERFAMILY Voltage-gated potassium channels 2 158 - -
Cca03g01537 379 ProSiteProfiles Ankyrin repeat profile. 294 326 IPR002110 GO:0005515
Cca03g01537 379 Pfam Ion channel 97 159 IPR013099 -
Cca03g01537 379 PANTHER POTASSIUM CHANNEL AKT1 325 377 IPR045319 GO:0005249|GO:0006813
Cca03g01537 379 PANTHER POTASSIUM CHANNEL AKT1 2 155 IPR045319 GO:0005249|GO:0006813
Cca03g01537 379 PANTHER POTASSIUM CHANNEL AKT1 155 324 IPR045319 GO:0005249|GO:0006813
Cca03g01537 379 ProSiteProfiles Ankyrin repeat profile. 355 379 IPR002110 GO:0005515
Cca03g01537 379 CDD CAP_ED 144 234 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01537 Cca-Chr3 34060248 34065793 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01537 155 378 Ion Channels AT4G32500 46.154 8.74e-76 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01537 K21867 - pop:112325052 333.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00546 05 12382104 12390183 Cca03g01537 03 34060248 34065793 PCT