Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01536 ATGGGGGCACCATTTAAAGGAATAATTGAAGATGTCAAGGGAAGAGCTCAATGCTATAAACAAGATTGGATTTGTGCAATCTGTTCTGGAGTTAGCATATTGGCTCCAACTTTCTACATATTCTTTGCTTCTGCTCTTCCAGTCATTGCTTTTGGAGAGCAGCTTAACAGGGATACAGATGGAAGCTTGAGCACAGTGGAAACATTGGCATCTACTGCCATTTGTGGAGTTATTCACTCAATATTGGGTGGCCAACCATTGTTGATTTTAGGAGTTGCTGAACCCACTGTGATTATGTACACTTATTTGTACAGCTTTTGCAAAAATAGGCCAGAAGTGGGGGAGAAGCTCTTTCTAGCTTGGGCTGGCTGGGTTTGTGTTTGGACTGCATTCATATTGATTCTGCTTGCAATTTTCAATGCTTGCACAATAATCACAAGGTTTACAAGACTAGCAGGGGAGTTATTTGGCATGCTCATCACTGTTCTTTTCTTTCAAGAGGCTATTAAGGGATTGATAGGCGAGTTCAACACGCCCAAGAATGAAGATCCTTCCTCAGTGGAATTTCAATTCCAGTGGCGGTATACTAATGGATTGCTTGCAATCATTTTCTGTTTTGGGCTACTTGTCACAGCCCTAAAAAGCAGAAGAGCAAGAACGTGGCGATATGGAACAGGGTGGCTACGAGGATTTGTAGCAGATTATGGCGTTCCAATGATGGTAGTGTTATGGACTGCATTATCTTATGGTGTACCGGGCAAAATTCCACACAATGTTCCTAGAAGGCTCGTTTGTCCCCTTCCCTGGGACCCTGAATCTCTCTATCATTGGACAGTAGTAAAGGATATGGGGAAGGTACCCTTGGTTTACATATTTGGGGCTATTCTTCCAGCTCTGATGATAGCAGGCTTGTACTTTTTCGATCACAGCGTAGCTTCACAGATGGCACAGCAGAAAGAATTTAACCTCCAAAAACCATCTGCCTACCACTATGATATTTTGCTGCTTGGAATAATGACTCTAATTTGCGGGATCCTTGGCCTTCCTCCTTCAAATGGAGTCCTTCCACAGTCCCCCATGCATACAAAGAGTTTAGCAGTTCTTAGGAAGCGGTTGATCCGAAAGAAGGTGGTGAAGAGTGCCAAGGAATGTATTAAGCAACAAAGGACCAACTCTGAATTATATGGAAAGATGGAAGAAGTGATTGTAGAAATGGATACAGACCCTACTGATAAAGAATTGGAGACTTTGAAGGAAGCTGTAATGAAATCCGATAAGCGGGATGGTACAGAGGAAAAATTTGATCCTGAGAAACACATAGATGCATATCTACCAGTCCGGGTTAATGAGCAAAGAATGACCAACTTATTGCAATCTCTTCTGGTTGGTGTATCAATCTTAGCCATGTCTGTTATCAAAAGGATACCAACCTCAGTTCTTTGGGGATATTTTGCTTACATGGCAATTGATAGTCTCCCAGGGAATCAGTTCTGGGAAAGGATATTGCTCCTCTTCATCACCCCAAGCCGGCGTTTCAAGTAA 1542 0.4261 MGAPFKGIIEDVKGRAQCYKQDWICAICSGVSILAPTFYIFFASALPVIAFGEQLNRDTDGSLSTVETLASTAICGVIHSILGGQPLLILGVAEPTVIMYTYLYSFCKNRPEVGEKLFLAWAGWVCVWTAFILILLAIFNACTIITRFTRLAGELFGMLITVLFFQEAIKGLIGEFNTPKNEDPSSVEFQFQWRYTNGLLAIIFCFGLLVTALKSRRARTWRYGTGWLRGFVADYGVPMMVVLWTALSYGVPGKIPHNVPRRLVCPLPWDPESLYHWTVVKDMGKVPLVYIFGAILPALMIAGLYFFDHSVASQMAQQKEFNLQKPSAYHYDILLLGIMTLICGILGLPPSNGVLPQSPMHTKSLAVLRKRLIRKKVVKSAKECIKQQRTNSELYGKMEEVIVEMDTDPTDKELETLKEAVMKSDKRDGTEEKFDPEKHIDAYLPVRVNEQRMTNLLQSLLVGVSILAMSVIKRIPTSVLWGYFAYMAIDSLPGNQFWERILLLFITPSRRFK 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01536 513 Pfam HCO3- transporter family 446 507 IPR011531 GO:0006820|GO:0016021
Cca03g01536 513 Pfam HCO3- transporter family 193 372 IPR011531 GO:0006820|GO:0016021
Cca03g01536 513 Pfam HCO3- transporter family 4 178 IPR011531 GO:0006820|GO:0016021
Cca03g01536 513 PANTHER BORON TRANSPORTER-LIKE PROTEIN 1 513 - -
Cca03g01536 513 PANTHER ANION EXCHANGE PROTEIN 1 513 IPR003020 GO:0005452|GO:0006820|GO:0016020
Cca03g01536 513 Gene3D Helical hairpin bin 15 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01536 Cca-Chr3 34052144 34057372 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01536 3 513 Antiporters AT5G25430 69.574 0.0 772
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01536 K24194 - gmx:100792745 958.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01536 03 34052144 34057372 Cca03g01536 03 34052144 34057372 ECH
Cca03g01536 03 34052144 34057372 Cca05g00547 05 12393749 12401030 ECH
Cca05g00547 05 12393749 12401030 Cca03g01536 03 34052144 34057372 PCT