Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01534 ATGCCTAAGGCTAAGGTTCATGTTTCCCTCCTTCGCCTAATCCTCTCTCGTCTGGTCTTCTCAACACTGTTCATCATCCACCACTCCCTAGCTGACGTTGGCACTGCAGCCAAATATGGCCCTCCCTTTCTGCCCACAGCGTGTTTCGGTAGAGACGCATCGCAGTTCCCCTCGAGTAACATGTTCGCTGCGGCAGGGGAAGCTATATGGGACAACGGTGCCGCGTGTGGGAGGCAGTATCAGCTGCGCTGCATCAGCGCCGTCGCTCCTGGAACTTGCACTCCTGCCCAGACGATTCAGATCAAGATTGTGGATCGAGCGCAATCAACGGTTTCCAGGCCTTCCCTAGGGGGAACTACCATGGTCCTCTCCACCACTGCCTTCCAGGCCATCGCAAATGTTTCTGCGTCCTTCGTTAACGTAGAATACCAGCAGGTTTGA 441 0.551 MPKAKVHVSLLRLILSRLVFSTLFIIHHSLADVGTAAKYGPPFLPTACFGRDASQFPSSNMFAAAGEAIWDNGAACGRQYQLRCISAVAPGTCTPAQTIQIKIVDRAQSTVSRPSLGGTTMVLSTTAFQAIANVSASFVNVEYQQV 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01534 146 PANTHER EG45-LIKE DOMAIN CONTAINING PROTEIN 15 146 - -
Cca03g01534 146 SMART dpbb_1 63 143 IPR007112 -
Cca03g01534 146 PANTHER EG45-LIKE DOMAIN CONTAINING PROTEIN 15 146 - -
Cca03g01534 146 SUPERFAMILY Barwin-like endoglucanases 20 146 IPR036908 -
Cca03g01534 146 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 34 146 IPR007112 -
Cca03g01534 146 Gene3D - 32 146 IPR036908 -
Cca03g01534 146 Pfam Lytic transglycolase 64 143 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01534 Cca-Chr3 34024824 34031080 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01534 43 146 Expansin Gene Family AT3G45970 32.456 9.00e-06 42.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01534 - - ccaj:109790666 283.108