Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01529 ATGTCTCAAACTAACTGGGAAGCTGATAAGATGTTAGATGTTTATATCCATGATTATCTTGTGAAGAGGGATTTAAAGGCTTCTGCTCAGGCTTTTCAAGCTGAGGGAAAAGTATCCTCGGACCCTGTTGCAATTGATGCCCCTGGAGGTTTTCTGTTCGAGTGGTGGTCGGTTTTCTGGGATATATTTATTGCAAGGACTAATGAGAAACACTCTGAGGTTGCTGCATCGTATATTGAGACACAATTAATAAAGGCAAGGGagcaacagcaacaacagcagcagcagcagcaacagccacaaccccagcagtcacagcatcaacaacaacagcagcagcaacacatgcagatgcagctcctgatgcagagggcacagcagcagcaacaacaacaacagcagcaacaacagcagcagcagcaacaacaacagccacaaccacagcaacaacagccacaacaacaacagcaaagtagGGATAGGGCTCATCTATTAAATGGTAGTGCAAATGGGTTAGTTGGAAACCCTGGAACTGCAAATGCACTAGCTACAAAGATGTATGAGGAAAGGTTAAAACTTCCCCTTCAAAGGGACTCTTTGGATGATGCTGCAATGAAGCAAAGATTTGGTGAGAACATGGGTCAACTCTTGGATTCAAATCATGCATCAATATTAAAGTCAGCTGCAGCTCCTGGCCAGCCTTCAGGGCAAGTTTTGCACGGTTCTGCTGGTGGGATGTCTCCACAAGTTCAAGCTCGTACTCAGCAATTACCGGGGTCTACTCTGGATATAAAGGGTGAGATTAGTCCTGTTTTAAATCCCAGAGCTGCAGGTCCTGAAGGATCATTGATGGCAATGCCTGGATCAAATCAAGGTAGCAACAATTTGACTTTGAAAGGGTGGCCACTCACAGGTTTGGAGCAACTGCGCTCTGGTCTACTCCAGCAACAAAAACCTTTCATGCAATCTCCTCAGCCTTTTCATCAACTCCAAATGTTGACACCACAGCATCAGCAACAGCTTATGCTGGCACAACAAAATTTGGCATCACCATCTGCCAGTGAAGAAAGTAGAAGACTAAGAATGCTATTGAATAATAGGAGTATTGGTCTAAATAAAGACGGTCTTTCAAATCCGGTTGGTGATGTGGTATCAAATATTGGATCCCCTCTTCAAGGTGGTGGTCCCCCTTTTTCTCGTGGAGATACAGATACGCTAATGAAGTTGAAACTGGCTCAGTTAcagcagcaacatcaacaacagtcaagtaccgcacagcaacagcaacttcaacagcaTGCCCTTTCAAATCAGCAATCTCAGAATTCTAATCATAGCATGCATCCGCAAGATAAAGTAGGGGGAGGTGGTGGCAGTGTCACTGTGGATGGTAGCATGTCAAATTCATTTAGAGGAAATGATCAGGTTTCAAAAAACCAGATGGGGAGAAAGAAAAAGCACCCTGGACCCTCCTAG 1476 0.3564 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQPQPQQSQHQQQQQQQHMQMQLLMQRAQQQQQQQQQQQQQQQQQQQPQPQQQQPQQQQQSRDRAHLLNGSANGLVGNPGTANALATKMYEERLKLPLQRDSLDDAAMKQRFGENMGQLLDSNHASILKSAAAPGQPSGQVLHGSAGGMSPQVQARTQQLPGSTLDIKGEISPVLNPRAAGPEGSLMAMPGSNQGSNNLTLKGWPLTGLEQLRSGLLQQQKPFMQSPQPFHQLQMLTPQHQQQLMLAQQNLASPSASEESRRLRMLLNNRSIGLNKDGLSNPVGDVVSNIGSPLQGGGPPFSRGDTDTLMKLKLAQLQQQHQQQSSTAQQQQLQQHALSNQQSQNSNHSMHPQDKVGGGGGSVTVDGSMSNSFRGNDQVSKNQMGRKKKHPGPS 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01529 491 MobiDBLite consensus disorder prediction 412 449 - -
Cca03g01529 491 MobiDBLite consensus disorder prediction 412 491 - -
Cca03g01529 491 SMART Lish 8 40 IPR006594 GO:0005515
Cca03g01529 491 Coils Coil 411 431 - -
Cca03g01529 491 MobiDBLite consensus disorder prediction 138 160 - -
Cca03g01529 491 MobiDBLite consensus disorder prediction 229 255 - -
Cca03g01529 491 Coils Coil 108 144 - -
Cca03g01529 491 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG-LIKE PROTEIN 1 491 - -
Cca03g01529 491 MobiDBLite consensus disorder prediction 240 255 - -
Cca03g01529 491 MobiDBLite consensus disorder prediction 91 117 - -
Cca03g01529 491 MobiDBLite consensus disorder prediction 461 477 - -
Cca03g01529 491 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Cca03g01529 491 Pfam LisH 10 36 IPR006594 GO:0005515
Cca03g01529 491 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 491 IPR044716 GO:0003714
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01529 Cca-Chr3 33926383 33931064 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Cca03g01529 LisH 6.7e-07 CL0561
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01529 - - gmx:100816263 542.347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00558 05 12763591 12782241 Cca03g01529 03 33926383 33931064 PCT