Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01527 ATGAACAACGGACACCTACCAATGAACGGCAGCAGCAGCTTCAACAATGATGTCTCTGATCAGTTGTGGGATGATGATCATAATGATGCAGACCCTATAGATACTGCTGGCTCTAGTCAAGTTGAAAGCACAGGCTTCACATTTTGTGAAGCTAATCACGTACGTGCAAGCACAAACAAAGTTATCTGTTGCCATCTCTCATCTGATGGGAAATTACTTGCAAGTGGTGGCCTTGACAAAAAGGCTGTTTTATGGTACACGGATTCTCTAACACAAAAAGCTACTCTTGAAGACCATTCAAGTTTGATCACCGATGTCCGTTTCAGTCCAAGCACGACACGTCTTGCAACATCTTCATTTGACAAAACTATGAGGATTTGGGATGTTGAGAATCCTTTTTATTCGCATCGCATCTTTACGGGACATTCTACAGCTATTATGTCGATAGATTTTCATTCAAATATTGATGACCTTGTCTGCTCTTGTGATGGTGATGGTGAGATACGGTACTGGAGCATAAACAATGGCAGTTGTGGAAGAGTCTTCACGGGTGGCACCACCCAAGTAAGATTTCAGCCTCGTCTTGGGAGGTACCTTGCTGCAGCAGCAGAGAACACTGTGTGTATATTTGATGTGGAGACACAAGCACGCCTATATTTCTTAAGGGGACACACAAAAACAGTGAGTTGTGTATGTTGGGACCCTTCTGGGGAGTTGCTGGCATCAGTGAGTGAGGACTGTGTGAGGGTTTGGACTCTTGGATCAGGGAATGAAGGGGAATGTTTATACGAACTTAGCTGCAATGGCAGTAAGTTTCATGCATGTGTTTTCCACCCGACGTACCCTTCATTGCTGGTCATTGGCTGTTACCAGTCATTGGAGCTGTGGAACATGAACGAGAACAAGACAATGACTCTGTCTGCTCATGATGGTCTTATTACTGCCTTGACTGTTTCAACTGTAAATGGTTTGGTTGCTTCTGCCAGTCACGACAAGTACATCAAACTCTGGAAGTGA 1017 0.4425 MNNGHLPMNGSSSFNNDVSDQLWDDDHNDADPIDTAGSSQVESTGFTFCEANHVRASTNKVICCHLSSDGKLLASGGLDKKAVLWYTDSLTQKATLEDHSSLITDVRFSPSTTRLATSSFDKTMRIWDVENPFYSHRIFTGHSTAIMSIDFHSNIDDLVCSCDGDGEIRYWSINNGSCGRVFTGGTTQVRFQPRLGRYLAAAAENTVCIFDVETQARLYFLRGHTKTVSCVCWDPSGELLASVSEDCVRVWTLGSGNEGECLYELSCNGSKFHACVFHPTYPSLLVIGCYQSLELWNMNENKTMTLSAHDGLITALTVSTVNGLVASASHDKYIKLWK 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01527 338 MobiDBLite consensus disorder prediction 1 40 - -
Cca03g01527 338 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG-LIKE PROTEIN 26 338 - -
Cca03g01527 338 ProSiteProfiles Trp-Asp (WD) repeats profile. 221 261 IPR001680 GO:0005515
Cca03g01527 338 Pfam WD domain, G-beta repeat 94 128 IPR001680 GO:0005515
Cca03g01527 338 Pfam WD domain, G-beta repeat 301 338 IPR001680 GO:0005515
Cca03g01527 338 Pfam WD domain, G-beta repeat 137 172 IPR001680 GO:0005515
Cca03g01527 338 Pfam WD domain, G-beta repeat 57 85 IPR001680 GO:0005515
Cca03g01527 338 Pfam WD domain, G-beta repeat 218 251 IPR001680 GO:0005515
Cca03g01527 338 SMART WD40_4 299 338 IPR001680 GO:0005515
Cca03g01527 338 SMART WD40_4 258 297 IPR001680 GO:0005515
Cca03g01527 338 SMART WD40_4 47 86 IPR001680 GO:0005515
Cca03g01527 338 SMART WD40_4 175 211 IPR001680 GO:0005515
Cca03g01527 338 SMART WD40_4 214 252 IPR001680 GO:0005515
Cca03g01527 338 SMART WD40_4 89 128 IPR001680 GO:0005515
Cca03g01527 338 SMART WD40_4 132 172 IPR001680 GO:0005515
Cca03g01527 338 ProSiteProfiles Trp-Asp (WD) repeats profile. 96 131 IPR001680 GO:0005515
Cca03g01527 338 CDD WD40 53 338 - -
Cca03g01527 338 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 96 131 - -
Cca03g01527 338 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 139 177 - -
Cca03g01527 338 Gene3D - 17 189 IPR015943 GO:0005515
Cca03g01527 338 MobiDBLite consensus disorder prediction 1 19 - -
Cca03g01527 338 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 306 338 - -
Cca03g01527 338 Gene3D - 190 338 IPR015943 GO:0005515
Cca03g01527 338 ProSitePatterns Trp-Asp (WD) repeats signature. 115 129 IPR019775 -
Cca03g01527 338 ProSiteProfiles Trp-Asp (WD) repeats profile. 306 338 IPR001680 GO:0005515
Cca03g01527 338 SUPERFAMILY WD40 repeat-like 52 338 IPR036322 GO:0005515
Cca03g01527 338 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 26 338 IPR044716 GO:0003714
Cca03g01527 338 ProSiteProfiles Trp-Asp (WD) repeats profile. 139 181 IPR001680 GO:0005515
Cca03g01527 338 PRINTS G protein beta WD-40 repeat signature 73 87 IPR020472 -
Cca03g01527 338 PRINTS G protein beta WD-40 repeat signature 115 129 IPR020472 -
Cca03g01527 338 PRINTS G protein beta WD-40 repeat signature 325 338 IPR020472 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01527 Cca-Chr3 33913472 33917342 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01527 51 253 U-box Gene Family AT2G33340 28.505 4.22e-16 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01527 - - ccaj:109788609 707.597
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01527 03 33913472 33917342 Cca03g01527 03 33913472 33917342 ECH