Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01521 ATGTATAAAGTAAACACAAATTGTGCCAAAGATGAAGAGCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAGATGAAGAGCGTCCACTCCGAATAACCAGAGCAAGGGCTAGAGCCTTGAGAGGGGCTCCTCCCTACGCAAGACCCTCCGTTAAAAATGAGCAGAAAAACGTCCGTAGAGTGAATTCCAAAAGAGCAGCTTCTGAAAACAAAACTTCTGTGGCTGCTCCTGCTCTTGTCCAGCATAAGGGAAGGGCAGTGTTTACAGATGTAACAAACATCTCACATGATGAGTGTACTAAGGCGTCGAGAATTCAGGTCAAAGGAGTTTATACGAAGAAAAGCACAAAGCAAGCTTCAGGTGTTTCCATTGAAGTTTCATCATTGCAACAGGATGTTAGAACAAAGTTAGCCGAAGAATTATCCACAACAGGGATGGTAGAATCGAATGACACCATAAGAGAGCGTGTTATAGCAAACGCCACCCTTTCATTGCTAAACTCTGTGAAATCTGATGAACTTCGGAGCTCTCCAAACAAAGGCATAGATATGATCTGTGAGAAGCTAGGAACCTCAGACTCCCTGCCTATTGTGGACATTGATTCAGAGTTAAAAGATCCTCAAGTTTGGAGTTCTTATGCCCCTGACATATACAGCAATATTCGAGTCACAGAGCTTGAAAGGAAACCACTCACCAACTACAACTACATGGAGAAGTTGCAGCATGATATTAATCCAAACATGCGCGGAATTCTGGTTGATTGGCTCGTAGAGGTTTCCGAGGAATACAAGTTGGTTCCAGACACTCTTTACCTGACAGTGAACCTCATTGATCGGTATCTCTCAACAAGATTCATTCAGAAGCAAAGGCTCCAGTTGCTCGGTGTTACTTGCATGCTTATTGCATCAAAGTATGAAGAGATATGTGCACCTCGAGTGGAGGAATTTTGCTTCATCACAGATAATACATACTCAAAAGAAGAGGTATTGAAAATGGAGAGAGAAGTACTAAATCTTCTGTATTTTCAGTTATCTGTTCCCACAATCAAAACATTTCTCAGGAGATTCATCCAAGCAGCACAATCTTCTTACAAGGCTCCTTGTATTGAACTGGAATTCCTGGCAAATTATTTAGCAGAGCTTGCTCTTGTTGAACACAGCTTCTTCCAGTTTCTACCTTCCCTTGCAGCTGCATCTGCTGTCTTCCTTGCCAGATGGACCCTGAACGACTCAGAACATCCATGGAATCCAACTCTGGAGCACTATACAAACTACAAAGCTTCAGAGCTCAAAACTGTTGTTCTTGCACTGCAAGAACTGCAAATTAATACCAAAGGCTGTCCCTTGAATGCTGTACGCGAGAAATATAAACAACAGAAGTTCAATTGTGTGGCAAACCTGTCTCCAAAGCTGGTGCAGTCACTCTTCCAGGTCCAAGTGTAA 1509 0.4003 MYKVNTNCAKDEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKDEERPLRITRARARALRGAPPYARPSVKNEQKNVRRVNSKRAASENKTSVAAPALVQHKGRAVFTDVTNISHDECTKASRIQVKGVYTKKSTKQASGVSIEVSSLQQDVRTKLAEELSTTGMVESNDTIRERVIANATLSLLNSVKSDELRSSPNKGIDMICEKLGTSDSLPIVDIDSELKDPQVWSSYAPDIYSNIRVTELERKPLTNYNYMEKLQHDINPNMRGILVDWLVEVSEEYKLVPDTLYLTVNLIDRYLSTRFIQKQRLQLLGVTCMLIASKYEEICAPRVEEFCFITDNTYSKEEVLKMEREVLNLLYFQLSVPTIKTFLRRFIQAAQSSYKAPCIELEFLANYLAELALVEHSFFQFLPSLAAASAVFLARWTLNDSEHPWNPTLEHYTNYKASELKTVVLALQELQINTKGCPLNAVREKYKQQKFNCVANLSPKLVQSLFQVQV 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01521 502 Coils Coil 73 93 - -
Cca03g01521 502 Pfam Cyclin, C-terminal domain 369 491 IPR004367 -
Cca03g01521 502 SMART cyclin_7 373 461 IPR013763 -
Cca03g01521 502 SMART cyclin_7 276 360 IPR013763 -
Cca03g01521 502 SUPERFAMILY Cyclin-like 227 366 IPR036915 -
Cca03g01521 502 ProSitePatterns Cyclins signature. 271 302 IPR006671 -
Cca03g01521 502 Coils Coil 46 50 - -
Cca03g01521 502 MobiDBLite consensus disorder prediction 63 89 - -
Cca03g01521 502 PANTHER CYCLINS 84 498 IPR039361 -
Cca03g01521 502 SUPERFAMILY Cyclin-like 368 491 IPR036915 -
Cca03g01521 502 Coils Coil 9 13 - -
Cca03g01521 502 CDD CYCLIN 270 359 IPR013763 -
Cca03g01521 502 Gene3D - 254 367 - -
Cca03g01521 502 Pfam Cyclin, N-terminal domain 238 366 IPR006671 -
Cca03g01521 502 CDD CYCLIN 367 459 IPR013763 -
Cca03g01521 502 SMART Cyclin_C_2 369 492 IPR004367 -
Cca03g01521 502 PIRSF Cyclin_A_B_D_E 49 501 IPR039361 -
Cca03g01521 502 PANTHER CYCLIN-A2-4 84 498 - -
Cca03g01521 502 Gene3D - 238 488 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01521 Cca-Chr3 33836964 33841472 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01521 52 498 Core Cell Cycle Gene Families AT5G25380 52.747 2.01e-149 433
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01521 K06627 - gmx:547780 711.449
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00564 05 13000640 13007510 Cca03g01521 03 33836964 33841472 PCT