Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01519 ATGGCGCACCCTACTCACCTTGTTATTGACATCACGGGGAGTTCCGGACCTTCCACATCTTCCTCTGATCCCCGTGATGTAGACTTTGGTGCTTTCAATTCTAGGACTAGGCGGCGAGGGGATAATGTGGCTAGGCATAGGAGTCCCTTGAATTCGGGGTTTTGGATATCTATTGAGTTGGTGATCACGGTTAGCCAGATTGTGGCGTCTCTTGTTGTTCTGTCTGTGTCAAGGCATGAGCATCCGCGTGCCCCCTTGTTTGCGTGGGTTGTTGGTTATGCATCTGGGTGTGTTGCTACGCTTCCTTTGCTCTATTGGCGTTATTATCATAATTGTCGCATTCGGGAGCACGAGTTGTCTCAGGCCTCTCAGAGGAGTAATGATTCTTCAGGGACACTTCTTTCTGATTCTGTTGCAATTGGAGGGGGAGATGTTCTGGCGTCCTCCAGAAGCAATCAGGACTCGTCGTGGCTGATGAATGCAAGATTGAAGGTACTTGTGGAATACTTCAAAATTGCTGTAGATTGCTTTTTTGCTATATGGTTCGTTGTTGGTAATGTATGGATTTTTGGAGGACATTCATCTAATAATGAAGCGCCTAACTTGTACAGGTTATGTGTAGTGTTTCTTACTTTTAGCTGTATCGGTTATGCTATGCCTTTCATTCTATGTGCAACAATTTGCTGCTGTCTGCCTTGTATAATTTCCATCCTTGGAGTTAGAGAGGATATAACACAAACCCGAGGTGCATCCTCTGAATCGATTAATGCTCTGCCAACTTATAAGTTCAAAATGAAGAAAAATAAGAACAAAGAGGAAATCAACTCAGCTGTTGGTGAAGGTGGAGTTGTGGCTGCAGGAACTGAAAAGGAACGAATGATCTCTGGAGAAGATGCAGTTTGCTGCATCTGCCTGGCAAAGTATGAAAATAATGATGAGCTGAGAGAATTGTCTTGTTCTCATCTTTTTCACAAAGACTGTGTCGACAAGTGGTTGAAGATAAATGCTTTATGCCCCCTTTGCAAGAGTGAGGTTGGTGAGAACGTAACAAGATCAGTCTCTAGGGAAGAGGCCAACCAACATCAGGGTGAAAGCAGTGTTGAGAATGGCCTCACTAATACCTCATTGTGA 1131 0.4439 MAHPTHLVIDITGSSGPSTSSSDPRDVDFGAFNSRTRRRGDNVARHRSPLNSGFWISIELVITVSQIVASLVVLSVSRHEHPRAPLFAWVVGYASGCVATLPLLYWRYYHNCRIREHELSQASQRSNDSSGTLLSDSVAIGGGDVLASSRSNQDSSWLMNARLKVLVEYFKIAVDCFFAIWFVVGNVWIFGGHSSNNEAPNLYRLCVVFLTFSCIGYAMPFILCATICCCLPCIISILGVREDITQTRGASSESINALPTYKFKMKKNKNKEEINSAVGEGGVVAAGTEKERMISGEDAVCCICLAKYENNDELRELSCSHLFHKDCVDKWLKINALCPLCKSEVGENVTRSVSREEANQHQGESSVENGLTNTSL 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01519 376 Pfam Ring finger domain 301 342 IPR001841 -
Cca03g01519 376 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 33 368 - -
Cca03g01519 376 MobiDBLite consensus disorder prediction 352 376 - -
Cca03g01519 376 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 283 351 IPR013083 -
Cca03g01519 376 SMART ring_2 301 341 IPR001841 -
Cca03g01519 376 MobiDBLite consensus disorder prediction 1 32 - -
Cca03g01519 376 SUPERFAMILY RING/U-box 293 348 - -
Cca03g01519 376 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 33 368 - -
Cca03g01519 376 MobiDBLite consensus disorder prediction 11 27 - -
Cca03g01519 376 ProSiteProfiles Zinc finger RING-type profile. 301 342 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01519 Cca-Chr3 33825610 33830374 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01519 38 352 C3H Transcription Factor Family AT1G80400 59.568 1.07e-138 399
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01519 - - gmx:100795904 604.364