Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01516 ATGATTCAAGTGTTTGTTAGAAAAGAAAAAATGGGTCTGGATTACTACAATGTGTTGAAGGTTAACAGAAATGCTACGGAAGATGATCTGAAGAAAGCATATAGAAAATTAGCCATGAAATGGCACCCTGACAAGAACCGCGAGAACAGCAATGAAGCTGAAGCCAGATTCAAACAGATCTCTGAGGCTTACGAGGTACTGAGTGATCCCCATAGAAGGGCGTTTTATGATCAGCATGGAGAGGAAGGGCTGAAAAATAAGCCACCAGCAGGTAATGGAACATCACCAAGTGGGTTCAATCCCAGAAATGCAGAGGATATTTTTGCAGAATTCTTTGGAAGTAGCCCTTTTGGATTTGGATCATCTGGGCCTGGGAGGTCCAGTAGATTCCCTTCAGATACAACATTTGGTGGATTTGACAATAATTTTCGATCATATAGTACAGGAAGGACTCATATGCCAAAGGCACCATCTGTGGAGACCAAACTCTCTTGCACTTTGGAGGAGCTATACTCTGGATCCACAAGGAAAATGAAGATCTCAAGGATTGTCATGGATGCTCATGGACGGCCAATTCAGGAATCAGAGATATTAAGCATTGATGTGAAGCCGGGTTGGAAGAAAGGGACAAAGATAACATTCCCAGAGAAAGGGAATCAGAAACCGAATGAAGTGGCAGCAGACCTGATATTTGTGATTGATGAAAAGCCTCATGATTTGTTCAAGAGAGATGGGAATGACCTGATTGTGAGCAAAAGGGTATCTCTGGCAGAGGCCATTGGAGGGACCACAGTAGATATCACTGCGCTTGATGGACGTAGTTTGAATATTCAAGTCACTAAAATTGTGAGCCCTGGCTATGAGATGACTGTTGAAAATGAAGGGATGCCAATAACAAAGGAGCCAGGTCAGAGGGGTGATTTGAGGATCAAGTTTGATGTAAAGTTCCCTACAATGTTGACCCCAGAGCAACGAGCAGAACTCAAGCGAGTACTGCCACCTTGA 1005 0.4348 MIQVFVRKEKMGLDYYNVLKVNRNATEDDLKKAYRKLAMKWHPDKNRENSNEAEARFKQISEAYEVLSDPHRRAFYDQHGEEGLKNKPPAGNGTSPSGFNPRNAEDIFAEFFGSSPFGFGSSGPGRSSRFPSDTTFGGFDNNFRSYSTGRTHMPKAPSVETKLSCTLEELYSGSTRKMKISRIVMDAHGRPIQESEILSIDVKPGWKKGTKITFPEKGNQKPNEVAADLIFVIDEKPHDLFKRDGNDLIVSKRVSLAEAIGGTTVDITALDGRSLNIQVTKIVSPGYEMTVENEGMPITKEPGQRGDLRIKFDVKFPTMLTPEQRAELKRVLPP 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01516 334 SMART dnaj_3 13 72 IPR001623 -
Cca03g01516 334 SUPERFAMILY HSP40/DnaJ peptide-binding domain 159 239 IPR008971 GO:0006457|GO:0051082
Cca03g01516 334 Pfam DnaJ C terminal domain 159 317 IPR002939 -
Cca03g01516 334 PRINTS DnaJ domain signature 16 34 IPR001623 -
Cca03g01516 334 PRINTS DnaJ domain signature 34 49 IPR001623 -
Cca03g01516 334 PRINTS DnaJ domain signature 52 72 IPR001623 -
Cca03g01516 334 PRINTS DnaJ domain signature 72 91 IPR001623 -
Cca03g01516 334 SUPERFAMILY HSP40/DnaJ peptide-binding domain 241 326 IPR008971 GO:0006457|GO:0051082
Cca03g01516 334 SUPERFAMILY Chaperone J-domain 13 121 IPR036869 -
Cca03g01516 334 Gene3D DnaJ domain 13 123 IPR036869 -
Cca03g01516 334 CDD DnaJ_C 157 320 - -
Cca03g01516 334 Gene3D - 158 236 - -
Cca03g01516 334 ProSiteProfiles dnaJ domain profile. 14 80 IPR001623 -
Cca03g01516 334 Pfam DnaJ domain 14 77 IPR001623 -
Cca03g01516 334 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 11 333 - -
Cca03g01516 334 CDD DnaJ 14 69 IPR001623 -
Cca03g01516 334 MobiDBLite consensus disorder prediction 80 100 - -
Cca03g01516 334 Gene3D - 237 333 - -
Cca03g01516 334 PANTHER DNAJ HEAT SHOCK FAMILY PROTEIN 11 333 - -
Cca03g01516 334 ProSitePatterns Nt-dnaJ domain signature. 57 76 IPR018253 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01516 Cca-Chr3 33800978 33803541 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01516 15 125 C2H2 Transcription Factor Family AT1G74250 33.043 1.04e-11 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01516 K09510 - gmx:100796426 492.271