Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01513 ATGCACACCAAATCGGCGCAGTCATCATTTCGAGATCGAACGCACGAATTCCAGAGCATTGCGGAGAGGCTGAAGAAGACAGTACCAGCACCAAATGGACAAAGCAGTAGCTCATCCAGATTCGAGGAACAGCGATCCGCTATCGCAAATCAATCAGAGTTCAATAAAAGAGCTTCCAAGGTCGGCTTCGGGATTCACCAAACGTCTCAGAAACTCGCCAAGCTCGCCAAGTTGGCTAAGAGGACTTCGGTTTTTGACGACCCTACCATGGAAATCCAAGAGCTTACGGCGGTTATTAAGCAAGACATTACCGCACTGAACTCCGCGGTTGTGGATCTTCAGTTACTCTGCAACTCTCGGAATGAGAGCGGGAACGCTTCCACCGACACCACTAGCCATTCAACCACGGTTGTTGATGACCTGAAGACGCGGTTGATGAGCACCACCAAAGAGTTTAAAGATGTTCTCACCATGCGAACTGAGAACTTGAAAGTGCATGAAAATAGAAGGCAACTGTTTTCGTCCTCTGCTTCCAAGGATACTGCAAATCCTTTTGTCCGGCAACGGCCGTTGGCTACTAGGTCAGCTGCTAGTACTTCTAATGCCCCTGCTCCACCATGGGCTACCGGCTCATCATCATCTCAGTTGTTTCCTAAGAAGCAGGTGGATGGGGAGAGTCAACCATTGCTAcaacagcagcagcagcaacaggagGTAGTTCCATTGCAAGACAGTTACATGCAAAGCAGAGCTGAAGCTCTTCAGAATGTTGAATCCACTATTCATGAGCTCAGCAGCATCTTTAATCAACTAGCAACACTTGTTTCCCAACAAGGAGAGATTGCCATCAGGATTGATGAAAACATGGATGATACATTGGCAAATGTGGAGGGGGCGCAAGGGGCTTTGTTGAATCATTCTAATGACAGAGAAATGAAAACGAGGAGACAAATGACGCCTTTCTTACTGGTGATAAGCCTTTTGTATTTCATTAATATTTCTTTCTCCAAATCTATATTCATCGCGGCAGAGTTTAGCTTAGGACCAAGTTTGTCAAATTTTATACTTGTACGTATCGATACTTATAACGAGGATAAGAACTATGTGCATTGCATATTGTCCATTTATCTTCCTGTGACTGATGATTTTAGAGTAGAAGGCGTGGGTTACACTTTTTCTTTCGGGAGGGAAACCTTATCAGGAAAATCGAAGGTACATCCTTGGCCGAGTGACGACTCGGGAGGGAAACCTTTTGAAGAAAGTCGAAGGTACATCCTTGGCCGAGTGACGACTTGGAAGGGAAACCTTTTGAAGAAAGCCAAAGGAAAACTGAAGGTACATCCTTGGCCGAGTGACAACTCGGGAGGGAAGCCTTTTCAGGAAAGCCGAAGGTACTTCCTTAGCCGAGTGACAACTCGGGAGGGAAACATTTTCAAGAAAGCAAAAGGAAATTCGAAGGCACATCCTTGGCCGAGTGATGACTCGGGAGGGAAACCTTTTCAAGAAATCCGAAGGTACATCCTTGGCCGAGTGACGACTCGAGAGGGAAACCTTTTCAAGAAACCAAGGGTACATCCTTGGCCGAGTGACGACTCGGGAGGGAAACCTTTTCAAGAAGCCAAAGGAAAACCTTATCAGGAAAATCGAAGGTACATCCTTGGCCGAGTGACGACTCGAGAGGGAAACCTTTTCAAGAAAGCCAAAGGTACATCCTTGGCCGAGCGACGACTCAGGAGGGAAACTTTTTCAGGAAACCAAAGATACATCCTTGGCCGAGTGACGACTCGGGAGGGAAACCTTTTCAGAAAACCAAAGGTACATCCTTGGCCGAGTGACGACTCGGGAGGGAAACCTTTTGAAGAAAGTCGAAGGTACATCCTTGGCCGAGTGACGACTTGGAAGGGAAACCTTTTCAAGAAAGCCAAAGGACAAGCAATCGTTTCCCCCGATTCTGGCGTTCGAGAGAAGTAA 1971 0.4627 MHTKSAQSSFRDRTHEFQSIAERLKKTVPAPNGQSSSSSRFEEQRSAIANQSEFNKRASKVGFGIHQTSQKLAKLAKLAKRTSVFDDPTMEIQELTAVIKQDITALNSAVVDLQLLCNSRNESGNASTDTTSHSTTVVDDLKTRLMSTTKEFKDVLTMRTENLKVHENRRQLFSSSASKDTANPFVRQRPLATRSAASTSNAPAPPWATGSSSSQLFPKKQVDGESQPLLQQQQQQQEVVPLQDSYMQSRAEALQNVESTIHELSSIFNQLATLVSQQGEIAIRIDENMDDTLANVEGAQGALLNHSNDREMKTRRQMTPFLLVISLLYFINISFSKSIFIAAEFSLGPSLSNFILVRIDTYNEDKNYVHCILSIYLPVTDDFRVEGVGYTFSFGRETLSGKSKVHPWPSDDSGGKPFEESRRYILGRVTTWKGNLLKKAKGKLKVHPWPSDNSGGKPFQESRRYFLSRVTTREGNIFKKAKGNSKAHPWPSDDSGGKPFQEIRRYILGRVTTREGNLFKKPRVHPWPSDDSGGKPFQEAKGKPYQENRRYILGRVTTREGNLFKKAKGTSLAERRLRRETFSGNQRYILGRVTTREGNLFRKPKVHPWPSDDSGGKPFEESRRYILGRVTTWKGNLFKKAKGQAIVSPDSGVREK 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01513 656 PANTHER SYNTAXIN-32-LIKE 2 309 - -
Cca03g01513 656 ProSitePatterns Syntaxin / epimorphin family signature. 250 289 IPR006012 GO:0005484|GO:0006886|GO:0016020
Cca03g01513 656 Gene3D - 48 299 - -
Cca03g01513 656 CDD SNARE_syntaxin5 247 305 - -
Cca03g01513 656 MobiDBLite consensus disorder prediction 1 45 - -
Cca03g01513 656 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 7 27 IPR021538 -
Cca03g01513 656 PANTHER SYNTAXIN 2 309 IPR045242 -
Cca03g01513 656 MobiDBLite consensus disorder prediction 520 546 - -
Cca03g01513 656 SUPERFAMILY t-snare proteins 51 299 IPR010989 GO:0016020|GO:0016192
Cca03g01513 656 SMART tSNARE_6 239 306 IPR000727 -
Cca03g01513 656 MobiDBLite consensus disorder prediction 1 22 - -
Cca03g01513 656 MobiDBLite consensus disorder prediction 29 45 - -
Cca03g01513 656 MobiDBLite consensus disorder prediction 192 240 - -
Cca03g01513 656 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 244 306 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01513 Cca-Chr3 33738434 33758616 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01513 1 330 SNARE and Associated Proteins AT3G24350 60.224 3.23e-120 360
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01513 K08490 - gmx:100810956 515.383