Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01512 ATGCACGTGAAATCGGCGCACTCGTCGTTCCGGGATCGCACACCGGAGTTCCACAGCATCACCGAGCGGTTGAAGAAGTCCGGATCAGGGCCCAATGGGCCCACCAGCAGTTCTTCCCGATCGGAGGAACAGCGATCCGCCATCGCAAACCAATCCGAGTTCAACCGAAGAGCCTCCAAAATCGGCTTCGGGATTCACCAAACGTCGCAGAAGCTCGCGAAGCTCGCCAAGTTGGCGAAGAGGACTTCGGTTTTCGATGACCCTACCATGGAAATCCAAGAGCTCACGGGTGTTATAAAGCAGGATATCACCGCTCTGAACTCTGCGGTTGTGGATCTTCAGTTGCTATGCAACTCTAGAAACGAGAGCGGAAACGTTTCTACGGACACCACTAGCCATTCGAGCACGGTGGTCGATGATTTGAAGACGCGGTTGATGAGCACCACCAAAGAGTTTAAGGATGTTCTCACCATGAGAACTGAGAACATGAAAGTGCATGAGAATAGAAGACAGTTGTTTTCGTCTTCTGCTACTAAGGATTCTGCGAATCCTTTCATTCGGCAACGGCCGTTGGCTGCAAGGGCGGCTGCTAGTACTTCTAATGCCCCTGCGCTTCCGTGGGCTAATGGGTCGCCATCTTCGTCTCAGGTGTTTCCTAAGAAGCAAGTGGATGGGGAGAGTCAACCATTGTTgcaacaacaacaacagcagcaacagcaggaggcagTTCCGTTGCAAGATAGTTACATGCAAAGCAGAACTGAAGCTCTTCAGAATGTTGAGTCCACTATTCACGAGCTTAGCAACATTTTTAATCAGTTAGCAACACTTGTTTCCCAACAAGGAGAAGTGGCCATCAGGATTGATGAAAACATGGATGATACATTGGCAAATGTAGAGGGGGCACAAGGGGCTTTGTTGAAGTATCTCAACAGCATATCTTCTAATCGGTGGTTGATGATCAAAATTTTCTTTGTACTAATATTTTTCCTTACAGTTTTCTTATTTTTTGTGGCATAG 1020 0.4647 MHVKSAHSSFRDRTPEFHSITERLKKSGSGPNGPTSSSSRSEEQRSAIANQSEFNRRASKIGFGIHQTSQKLAKLAKLAKRTSVFDDPTMEIQELTGVIKQDITALNSAVVDLQLLCNSRNESGNVSTDTTSHSSTVVDDLKTRLMSTTKEFKDVLTMRTENMKVHENRRQLFSSSATKDSANPFIRQRPLAARAAASTSNAPALPWANGSPSSSQVFPKKQVDGESQPLLQQQQQQQQQEAVPLQDSYMQSRTEALQNVESTIHELSNIFNQLATLVSQQGEVAIRIDENMDDTLANVEGAQGALLKYLNSISSNRWLMIKIFFVLIFFLTVFLFFVA 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01512 339 PANTHER SYNTAXIN-32-LIKE 2 338 - -
Cca03g01512 339 SMART tSNARE_6 242 309 IPR000727 -
Cca03g01512 339 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 6 26 IPR021538 -
Cca03g01512 339 Gene3D - 46 302 - -
Cca03g01512 339 MobiDBLite consensus disorder prediction 1 48 - -
Cca03g01512 339 Pfam SNARE domain 284 335 IPR000727 -
Cca03g01512 339 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 247 309 IPR000727 -
Cca03g01512 339 SUPERFAMILY t-snare proteins 51 302 IPR010989 GO:0016020|GO:0016192
Cca03g01512 339 MobiDBLite consensus disorder prediction 1 23 - -
Cca03g01512 339 MobiDBLite consensus disorder prediction 25 48 - -
Cca03g01512 339 PANTHER SYNTAXIN 2 338 IPR045242 -
Cca03g01512 339 ProSitePatterns Syntaxin / epimorphin family signature. 253 292 IPR006012 GO:0005484|GO:0006886|GO:0016020
Cca03g01512 339 MobiDBLite consensus disorder prediction 203 248 - -
Cca03g01512 339 CDD SNARE_syntaxin5 250 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01512 Cca-Chr3 33731506 33735695 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01512 1 339 SNARE and Associated Proteins AT3G24350 65.565 3.90e-148 420
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01512 K08490 - gmx:100811494 505.753