Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cca03g01512 | ATGCACGTGAAATCGGCGCACTCGTCGTTCCGGGATCGCACACCGGAGTTCCACAGCATCACCGAGCGGTTGAAGAAGTCCGGATCAGGGCCCAATGGGCCCACCAGCAGTTCTTCCCGATCGGAGGAACAGCGATCCGCCATCGCAAACCAATCCGAGTTCAACCGAAGAGCCTCCAAAATCGGCTTCGGGATTCACCAAACGTCGCAGAAGCTCGCGAAGCTCGCCAAGTTGGCGAAGAGGACTTCGGTTTTCGATGACCCTACCATGGAAATCCAAGAGCTCACGGGTGTTATAAAGCAGGATATCACCGCTCTGAACTCTGCGGTTGTGGATCTTCAGTTGCTATGCAACTCTAGAAACGAGAGCGGAAACGTTTCTACGGACACCACTAGCCATTCGAGCACGGTGGTCGATGATTTGAAGACGCGGTTGATGAGCACCACCAAAGAGTTTAAGGATGTTCTCACCATGAGAACTGAGAACATGAAAGTGCATGAGAATAGAAGACAGTTGTTTTCGTCTTCTGCTACTAAGGATTCTGCGAATCCTTTCATTCGGCAACGGCCGTTGGCTGCAAGGGCGGCTGCTAGTACTTCTAATGCCCCTGCGCTTCCGTGGGCTAATGGGTCGCCATCTTCGTCTCAGGTGTTTCCTAAGAAGCAAGTGGATGGGGAGAGTCAACCATTGTTgcaacaacaacaacagcagcaacagcaggaggcagTTCCGTTGCAAGATAGTTACATGCAAAGCAGAACTGAAGCTCTTCAGAATGTTGAGTCCACTATTCACGAGCTTAGCAACATTTTTAATCAGTTAGCAACACTTGTTTCCCAACAAGGAGAAGTGGCCATCAGGATTGATGAAAACATGGATGATACATTGGCAAATGTAGAGGGGGCACAAGGGGCTTTGTTGAAGTATCTCAACAGCATATCTTCTAATCGGTGGTTGATGATCAAAATTTTCTTTGTACTAATATTTTTCCTTACAGTTTTCTTATTTTTTGTGGCATAG | 1020 | 0.4647 | MHVKSAHSSFRDRTPEFHSITERLKKSGSGPNGPTSSSSRSEEQRSAIANQSEFNRRASKIGFGIHQTSQKLAKLAKLAKRTSVFDDPTMEIQELTGVIKQDITALNSAVVDLQLLCNSRNESGNVSTDTTSHSSTVVDDLKTRLMSTTKEFKDVLTMRTENMKVHENRRQLFSSSATKDSANPFIRQRPLAARAAASTSNAPALPWANGSPSSSQVFPKKQVDGESQPLLQQQQQQQQQEAVPLQDSYMQSRTEALQNVESTIHELSNIFNQLATLVSQQGEVAIRIDENMDDTLANVEGAQGALLKYLNSISSNRWLMIKIFFVLIFFLTVFLFFVA | 339 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cca03g01512 | 339 | PANTHER | SYNTAXIN-32-LIKE | 2 | 338 | - | - | |
Cca03g01512 | 339 | SMART | tSNARE_6 | 242 | 309 | IPR000727 | - | |
Cca03g01512 | 339 | Pfam | Syntaxin-5 N-terminal, Sly1p-binding domain | 6 | 26 | IPR021538 | - | |
Cca03g01512 | 339 | Gene3D | - | 46 | 302 | - | - | |
Cca03g01512 | 339 | MobiDBLite | consensus disorder prediction | 1 | 48 | - | - | |
Cca03g01512 | 339 | Pfam | SNARE domain | 284 | 335 | IPR000727 | - | |
Cca03g01512 | 339 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 247 | 309 | IPR000727 | - | |
Cca03g01512 | 339 | SUPERFAMILY | t-snare proteins | 51 | 302 | IPR010989 | GO:0016020|GO:0016192 | |
Cca03g01512 | 339 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Cca03g01512 | 339 | MobiDBLite | consensus disorder prediction | 25 | 48 | - | - | |
Cca03g01512 | 339 | PANTHER | SYNTAXIN | 2 | 338 | IPR045242 | - | |
Cca03g01512 | 339 | ProSitePatterns | Syntaxin / epimorphin family signature. | 253 | 292 | IPR006012 | GO:0005484|GO:0006886|GO:0016020 | |
Cca03g01512 | 339 | MobiDBLite | consensus disorder prediction | 203 | 248 | - | - | |
Cca03g01512 | 339 | CDD | SNARE_syntaxin5 | 250 | 328 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Cca03g01512 | Cca-Chr3 | 33731506 | 33735695 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Cca03g01512 | 1 | 339 | SNARE and Associated Proteins | AT3G24350 | 65.565 | 3.90e-148 | 420 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cca03g01512 | K08490 | - | gmx:100811494 | 505.753 |