Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01507 ATGGGAGAGGTGGCAGTAATGCACTCTGAGCCTCTGCAGTTTGACTGCAATGACATGAAGCATATGACTGAGAAAGATGTGTATAATCTACCTTCAAATGAAGAGCACATCCTTGAAGAAGAATCAAGTCAATCCACAAATCAGAAAAAGATCAATGAGTTGCAAGAGAGAGGATACATGGAATATGGATGCCAACATTACCGAAGAAGATGCCGTATTAGGGCTCCCTGTTGCAACGAGATTTTTGATTGTCGCCATTGTCACAATGAGACAAAAAATAATATCAACATTGATCAGAAGCATAGACACGATATTCCACGCCATCAAGTTAAACAGGTGATATGTTCGCTTTGTGGTACCGAACAAGAGGTTCAGCAAAACTGTATTAACTGTGGTGTTTGTATGGGCAAGTACTACTGTGGGACGTGTAAGCTCTTTGACGATGATGTATCTAAGCAGCAGTATCATTGCAGTGGCTGTGGAATTTGCAGAACTGGAGGATGTGAAAATTTCTTCCACTGCTACAAATGTGGTTGTTGCTACTCAACACTGCTGAAAAACAGTCACCCTTGTGTGGAAGGAGCAATGCATCACGATTGCCCCATTTGTTTTGAGTTTTTGTTTGAATCTCTGAATGATGTCACTGTTTTGCTGTGTGGACATACAATACATAAGAGTTGCCTGAAGGAAATGAGGGAACACTTCCAGTATGCGTGTCCTCTCTGCTCGAAGTCGGTTTGTGATATGTCAAAGGTTTGGGAGAAATTTGACTTGGAGATTGCTGCTACACCAATGCCTGAACAATATCAAAACAAAATGGTTTGGATCCTTTGCAATGATTGTGGCAAAACATCTCACGTTCAATTCCATCTTGTTGCTCAGAAGTGCTTGAACTGCAAGTCCTACAACACACGGCAAACAAGAGGCTGA 930 0.4172 MGEVAVMHSEPLQFDCNDMKHMTEKDVYNLPSNEEHILEEESSQSTNQKKINELQERGYMEYGCQHYRRRCRIRAPCCNEIFDCRHCHNETKNNINIDQKHRHDIPRHQVKQVICSLCGTEQEVQQNCINCGVCMGKYYCGTCKLFDDDVSKQQYHCSGCGICRTGGCENFFHCYKCGCCYSTLLKNSHPCVEGAMHHDCPICFEFLFESLNDVTVLLCGHTIHKSCLKEMREHFQYACPLCSKSVCDMSKVWEKFDLEIAATPMPEQYQNKMVWILCNDCGKTSHVQFHLVAQKCLNCKSYNTRQTRG 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01507 309 PANTHER CHY-TYPE/CTCHY-TYPE/RING-TYPE ZINC FINGER PROTEIN 21 309 - -
Cca03g01507 309 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 195 261 IPR013083 -
Cca03g01507 309 Pfam Zinc-ribbon 247 305 IPR039512 -
Cca03g01507 309 Pfam CHY zinc finger 64 145 IPR008913 GO:0008270
Cca03g01507 309 ProSiteProfiles Zinc finger CHY-type profile. 57 133 IPR008913 GO:0008270
Cca03g01507 309 Gene3D - 271 309 - -
Cca03g01507 309 Pfam Ring finger domain 199 242 IPR001841 -
Cca03g01507 309 SUPERFAMILY RING/U-box 199 248 - -
Cca03g01507 309 SUPERFAMILY CHY zinc finger-like 61 135 IPR037274 GO:0008270
Cca03g01507 309 ProSiteProfiles Zinc finger RING-type profile. 200 243 IPR001841 -
Cca03g01507 309 SMART ring_2 200 242 IPR001841 -
Cca03g01507 309 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 21 309 - -
Cca03g01507 309 ProSiteProfiles Zinc finger CTCHY-type profile. 135 199 IPR017921 -
Cca03g01507 309 SUPERFAMILY Zinc hairpin stack 136 193 IPR037275 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01507 Cca-Chr3 33693865 33696931 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01507 62 309 C2H2 Transcription Factor Family AT3G18290 40.157 4.02e-53 185
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00580 05 13397617 13402046 Cca03g01507 03 33693865 33696931 PCT