Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01504 ATGTCCGTGCTATCTCTAGTTAGAAGACGTTCAAGTGGCGAAATAAGGAACTTGACCTCGGTTTATAGTAGCCTCTTTGCATTTGGCACCATCATTGATGATGAAGGTTACTCGAACCTAAGAAAATATGTCATTGCTCCCTATGACCGTAGATATCAATTGTGGCAAACGTTCCTGGTGGCATTGGTAGTGTACTCTGCATGGGCATCTCCATTCGAGCTAGCTTTCAGAGAACTGTTGGTTGGGTCGCTGTTGCCCGTTGATCTCCTTGTCGATACCTTTTTCGCGGTTGACATAATCCTTACTTTCTTTGTGGCTTACTTAGATACATCAACTTATCTCCTCGTTGACGACCATAAGAAGATTGCTCTCAGGTACGTCAAAAAGTTACACTTCACCATGGATCTGGCCTCCACTCTGCCATTTGAGCAGATACACCAGATTCTGACGGGTAAACCAAACAAAAGCGAAGTCTTTGGTTTCCTAATTATGCTTAGACTCTGGCGATTGAGGCGTGTTAGCGAACTCTTCGCGAGGCTAGAAAAAGACATACGAATTAACTATTCGACAGCAAGATTTTGCAAACTTATTTGCGTTACGCTATTTGCAGTGCACTTCGCAGGCTGCATGTATTTTTGGTTGGCTGTCCAGCACAAAACACCGAAAAACACATGGATAGGGAACAAAACAGAGGATTTCAAAGATTTGAGCATCGGGTTGGGTTACACTTATTCCATGTACTGGTCTGTTTCAACCCTTACCACTGTTGGCTATGGAGATTTTTATGCAGTGAATTTAACGGAGAAGCTTTTCAGTATTTTATACATGCTGTTTAACATCGGCCTCGCTGCATATATAATCGGAAACATGACAATTCTGTTGGTTCATAGCTCTGTCCAAACACTTGACATGAGGAGTGCCTTCAACAAAATATTACGATATGCAAACAAAAATAGACTCCCGGAAGGCTTAAAGGAGCAAATGTTGGCACACATGCAATTGAAGTTTAAGACTGCAGAGTTACAGCAAGAAGTGCTACAAGACCTACCTAAAACAATAAGATCCAGCATTGCTCGGCATCTTTTCCAAAATATAGTTGAAACAACATATTTATTTAAAGGAGTCTCTGATGATTTTATCACCCATCTGGTGTCAGAAATGAAAGCAGAATACTACCCATCTAAGGTTGACATTATCTTGCAAAATGAGATGCCAACATATCTCTACATTTTGGTATCTGGATCACTGGATGTGTTGATTTACAAGAATGGGTCCGAACAGTTTTTGTTCAAACTTGAATCTGGAGGCATGGCGGGAGAAATAGGCGTGCTGTTTAATATTCCACAACCTTATACAGTGAGAAGTAAGGAGCTCTCCCAGGTCATACGAATCAATCATCATCATTTCAAGCAGATGGTGCAACCATTTAGTGACGATGGGAATACAATCATCTACAACCTTATTCAGTATTTGAACGGCCTCAAAGGCAAAGTGCCAGACGAAATGTCTTGTGTAACAGAATTAACGGGTGACCTGCATGATGAGCATCTAACCCAAATTGAGGGTACACACTACGAAGGTTCAAGATATCAAGAAAATCCGTATAATGAAGGAAGAACAAGAGATTTCAGTCCACTTTCAAGCTCAGTCTCCATTAGAGTTAAAATCCACGGACATCATCCCAATGAAAACAAAACGGGAAACGAAACAACACAGAAGCTCATACTTCTCCCAAATTCGGCAGAAGATCTTTTGAGAATTGCAGAGAACAAATTTGGAAAAAGAAGAAGCAAAATTCTCATGGCTGACGGCTCAGAAGTAGAAGAACTAATCGCGATAAGGGAGAATGACGAGTTATATATCATATAA 1869 0.4082 MSVLSLVRRRSSGEIRNLTSVYSSLFAFGTIIDDEGYSNLRKYVIAPYDRRYQLWQTFLVALVVYSAWASPFELAFRELLVGSLLPVDLLVDTFFAVDIILTFFVAYLDTSTYLLVDDHKKIALRYVKKLHFTMDLASTLPFEQIHQILTGKPNKSEVFGFLIMLRLWRLRRVSELFARLEKDIRINYSTARFCKLICVTLFAVHFAGCMYFWLAVQHKTPKNTWIGNKTEDFKDLSIGLGYTYSMYWSVSTLTTVGYGDFYAVNLTEKLFSILYMLFNIGLAAYIIGNMTILLVHSSVQTLDMRSAFNKILRYANKNRLPEGLKEQMLAHMQLKFKTAELQQEVLQDLPKTIRSSIARHLFQNIVETTYLFKGVSDDFITHLVSEMKAEYYPSKVDIILQNEMPTYLYILVSGSLDVLIYKNGSEQFLFKLESGGMAGEIGVLFNIPQPYTVRSKELSQVIRINHHHFKQMVQPFSDDGNTIIYNLIQYLNGLKGKVPDEMSCVTELTGDLHDEHLTQIEGTHYEGSRYQENPYNEGRTRDFSPLSSSVSIRVKIHGHHPNENKTGNETTQKLILLPNSAEDLLRIAENKFGKRRSKILMADGSEVEELIAIRENDELYII 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01504 622 PRINTS EAG/ELK/ERG potassium channel family signature 88 98 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cca03g01504 622 PRINTS EAG/ELK/ERG potassium channel family signature 99 108 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cca03g01504 622 PRINTS EAG/ELK/ERG potassium channel family signature 242 259 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cca03g01504 622 PRINTS EAG/ELK/ERG potassium channel family signature 268 279 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cca03g01504 622 PRINTS EAG/ELK/ERG potassium channel family signature 286 295 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cca03g01504 622 SUPERFAMILY Voltage-gated potassium channels 47 294 - -
Cca03g01504 622 Pfam Cyclic nucleotide-binding domain 392 474 IPR000595 -
Cca03g01504 622 SUPERFAMILY cAMP-binding domain-like 301 491 IPR018490 -
Cca03g01504 622 SMART cnmp_10 371 488 IPR000595 -
Cca03g01504 622 Pfam KHA, dimerisation domain of potassium ion channel 553 621 IPR021789 -
Cca03g01504 622 ProSiteProfiles cAMP/cGMP binding motif profile. 371 490 IPR000595 -
Cca03g01504 622 Gene3D - 53 295 - -
Cca03g01504 622 ProSiteProfiles KHA domain profile. 553 622 IPR021789 -
Cca03g01504 622 PANTHER POTASSIUM CHANNEL AKT1 25 621 IPR045319 GO:0005249|GO:0006813
Cca03g01504 622 CDD CAP_ED 371 484 IPR000595 -
Cca03g01504 622 Gene3D Jelly Rolls 342 500 IPR014710 -
Cca03g01504 622 PANTHER POTASSIUM CHANNEL KAT3 25 621 - -
Cca03g01504 622 Pfam Ion transport protein 53 291 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01504 Cca-Chr3 33664283 33672294 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01504 1 621 Ion Channels AT4G32650 54.574 0.0 652
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01504 K21867 - gmx:100794620 1046.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01504 03 33664283 33672294 Cca03g01504 03 33664283 33672294 ECH