Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01500 ATGGAGGATCAGGCGAATCACGCTACACCGCCGCGGGATGAAGAGGAGGATTCTAAGAAGGAAGAAGAGGAATTGATTGCAAAGGTTAACAAACTCATGGATAAGATCACTTCCGCACCTGATAACCCTAAAGCCACCGTTCTCCACGCCCTTGCTTCCATTCTCGAAACGCAAGAGTCACGATACATGGACGAGAATGGTCATTCTTCTTCGAGCAATGCTCGTGCTGCGCATATCATTGGCCGCCTTGGCGGCTTAATCCGGGAAAATGATGAGTTCTTTGAGTTGATATCGTCGAAGTTTCTTTTAGAAACAAGATACTCGACTTCCATTCAAGCTGCTGCTTGTAGGCTTCTCCTATGCTGTTCACTAACTTGGATTTATCCTCATGTTTTTGAAGAATCCGTCATGGAAAACATAAAAAATTGGGCGATGGATGATAACCCTAGGGTGTCTGCTGAAGAGCAGAATCTGAAGCATAATCCTGACAGGAGGGAGGCATCAGATTCTGAAATGTTGAAAACTTATTCTACTGGACTCCTTGCTGTGTGTTTGGTCGGTGGAGGTCAAATAGTGGAAGATGTATTGACATCTGGCTTGTCTGCTAAGCTTATGCGTTATCTTCGTTTACGAGTGCTGGGAGAGACCAGTAGCAGCCAGAAAGATGTTACTCATATAACAGAGAGTAGGCATGCATCTGCAAATACTTCAGGAAGAGGTAGAGATGATGGTCGCGGAAGATTTCGCCAGCTCCTGGAATCTAATCATTTGGATGATACTAGGAAGATTGACGAGAGATCTTTAGATGATGTAACTCTTGAAAGGGGTCCGGATAGAAGCATTAGTGGACAAACTTGCCCAGATGGATCTTGGATAGATGGTGAACCACCCGATGAGTTTGGTGAAGGTGCTGATGTCCGCGAGGTAGATTCTGATGGAGAGGATAGATGGCGTTGTAGAGATATACGTGATGGAAGGATAAAATATGGTGAGCATGACGACAATGTTAGGGATGACTCTTCGAGGCGGCGTGCAAACCGTGGATGGGGGAGATCTAGAGGGAAAGGAAGGATCAATGAAGGGACTGTAGAAAGTGATCCCATTTTGTCATCTCCTGGTTCTGGTAGTCGATTAGGACTGGGACGGAGTGTTAGAGATAGAAGCATATTGAGGAATGCTGACATTAGGAGGGTGGCTGATTCTAAGAAGACCCTTGGTAGGTCCCCTTCTTCTTTTGAAAGAGAGGATAATGATGATTGTTTCCAAGAGTGCCGAATTGGAAGTAAAGACATAACCGATCTTGTCCGAAAAGCAGTTCAAGCTGCTGAAGCTGAAGCTAGATCAGCCAATGCACCTGAAGAAGCTGTGCAAGCAGCTGGGGATGCTGCTGCTGATCTTGTAAAAACTGCAGCTTCAGAGGAATATAAATCCTCTAATGATGAAGAAGCTGCTTTTTTGGCTGCTTCAAGAGCTGCATCAACTGTTATCGAGGCTGCATCTGCAGTTGAAGTTTCAAGGATTTCTATATGCGACAATACTATAACAGAGAATATGAGTGGCAAAGAATCCGAAACTAATGAGGATGTTGAAGAGTACTTCATCCCAGATACTCAATCACTTGCACAGTTGAGAGAAAAATATTGCATTCAGTGTCTCGAGTTACTAGGAGAATATGTAGAAGTTCTTGGCCCTGTGTTGCATGAGAAGGGAGTTGATGTGTGTCTTGCACTTCTACAGCAGAATTCTAAACATCGGGAGGCATCCAAAGTTGCTTTGCTGTTGCCTGATGTCATGAAGCTAATATGTGCTTTAGCTGCACATAGGAAATTTGCTGCACTATTTGTGGACCGTGGGGGAATGCAAAAGCTGCTTGCTGTCCCTAGAATGGCTCAAACCTTCTTTGGCCTTTCTTCTTGTCTATTTACTATTGGTTCTCTTCAGGGGATAATGGAACGGGTTTGTGCTCTTCCATCAGAAGTTGTTTATCATGTTGTTGAGTTAGCTCTCCATCTCCTTGACTGCAATCAAGACCAAGCCCGGAAGAATGCAGCATTGTTTTTTGCTGCTGCATTTGTCTTCAGAGCAGTTCTTGATGCCTTTGATTCCCTGGATGGATTACACAAATTACTGGGGCTTCTAAATGATGCTGCTTCAGTAAGATCAGGAGTAAATTCTGGAGCCTTGAGTTTATCTAACTCAGGATCGCTTCGAAATGATCGATCATCTGCGGAAGTGCTGACATCATCTGAGAAGCAGATTGCTTATCACACTTGTGTTGCTTTGCGGCAATATTTCAGGGCTCATCTCCTTGTATTAGTGGATTCTATTCGTCCAAACAAAAGCAATCGTAGTGCTGCTAGAAATATTCCAAGTGTAAGGGCTGTGTACAAGCCACTTGATATTAGTAATGAGGCAATGGATGCAGTATTCCTGCAATTACAAAAAGATCGGAAGCTAGGTCCTGCATTTGTGAGAACACGTTGGCTAGCAGTTGAGAAGTTCTTGGCATCTAATGGACATGTTACTATGTTGGAATTGTGTCAGGCCCCACCTGTGGAGCGATATCTTCATGATTTGCTTCAGTATGCGTTGGGTGTTCTTCACATTGTTACATTGGTACCTAGCAGTCGTAAGATGATTGTAAATGTAACATTAAGCAATAATCGTGTCGGTATTGCAGTAATTTTGGATGCTGCAAATATAGTTAGTAATCACGTGGACCCTGAGATAATTCAACCAGCATTAAATGTCTTGGTCAATCTTGTTTGCCCTCCTCCTTCAATCAGCAATAAGCCAGCTATGGTTGGACAAGGTCAGCAGTTGGCGCCTTCACAAACATCTAATGGTCCTCCCTCCGAGGCTAGAGATAGAAATGCTGAACGTAATGTCTCAGATCGAGCTGTTCACTTTACTAGCCAGACTGATCCTAGGGAGAGGAATGGGGAGTCCAATGCTGTAGATCGAGGCAGTGCTGCAGGATCCAGTACACTGCCTGTTAATAGTACTCCACAAACTCCTGTTGCTTCAGCAACCTCAGGATTGGTTGGCGACCGAAGAATATCATTGGGTGCTGGAGCTGGTTGTGCTGGTCTTGCTGCTCAATTGGAACAAGGATATCGTCAGGCAAGAGAGGCTGTACGCTCTAATAATGGTATCAAGGTTCTTCTGCATCTTCTCCAACCGCGCATATATTCTCCTCCTGCTGCTCTAGATTGTCTTCGTGCTCTATCATGTCGAGTCTTGCTTGGATTAGCCAGAGATGATACTATTGCACACATATTGACCAAGCTTCAGGTTGGGAAAAAGCTGTCAGAACTGATTCGGGATTCAGGCAGCCAAACACCTGGAACAGAGCAGGGTAGATGGCAAACTGAACTTTCCCAGGCTGCGATTGAGCTTATTGGGATTGTGACTAATTCAGGACGTGCCAGTACATTAGCTGCTACTGATGCAGCTACTCCTACTTTAAGGCGTATAGAAAGAGCTGCTATAGCTGCTGCCACTCCTATTACTTACCATTCAAGGGAACTCTTGCTCCTAATTCATGAACACCTGCAAGCATCTGGAATGACACAAACTGCTTCTTTGTTGCTCAAAGAGGCTCAGTTGACTCCTTTGCCATCATTGGTTGCTCCATCTTTTCTTGCACAACAGCCCACCTCACAGGAAGTTTCTTCAACACAAATTCAGTGGCCCTCTGGTCGTACTCCTTCTGGATTTCTCTCTAACAAATTAAAAGTTAATGCGAAGGATGAGGATGCTAGCTTGAAAAGTGATTCTATTTCTGCAAAGAAAAAATCACTGACTTTCTCATCATCTTTTCATTCAAGACTGCAACTTTACTCTCAGCAATTATCAGTCAGTAAATGGTCAAGTACTGGTAAAGAGTCTTCAGAAACTAGTGCAGTAGATACTACATCTGAATCTTTGGTGAAAAATAATATTGATACTGGATCTCTGTTTAAGACTCCTATTTCCTTGCCAGCAAAACGTAAGTTATCTGATATAAAGGATATAGCAATGTTTTCAGCTTCTGGAAAACGACTAAATATTGGGGATCAAGGACTTCGCTCTCCTATATGTTCAAGTGCAATTCGTAAAAGCAGCCTGCAGACTGATGCTGTTGGGCTTGTCACACCAATTTGTAACTTGAGAAATCAACAGAGCCGTTGTATGGGTGATTTTGTGGATGAGAATCAGTACAATACTCCAAATACAGGTCAGATGACACCATCCTCCCAAGTATTGAATGATCTTCAGCCCAACAACCCTGAGCGTGTAACACTGGATTCGCTAGTGGTTCAGTATCTGAAGCATCAGCATCGCCAATGTCCAGCTCCTATTACCACTCTTCCTCCACTGTCTCTGCTGCATCCACATGTCTGCCCTGAACCAAAGCGAAGCCTTGATGCTCCTTCTAATGTGACTGCTCGACTTGGTACACGGGAATTTAAATACATGTATGGTGGAGTGCATGGGAATCGTAGGGATCGGCAATTTATTTACAGTCGGTTTAGGCCGGGGCGTCCTTGTCGGGATGATGCCGGTGCCTTGTTAACATGCATTACATTTGTTGGGGACTCTTCTCACATTGCTGTTGGTAGCCATAATGGAGAGCTCAAATTTTTTGACTCCAACAACAGCAATGTTGTCGAGAGCTACACTGGTCATCAGTCTCCTTTGACTCTTGTTCAGTCTTTCGTTTCTGGTGAGACCCAACTATTGCTTTCTTCAAGCTCCCAAGATGTTAGGTTGTGGGATGCATCATCAATTTTAGGAGGTCCTAGCCATTCATTTGAAGGATGCAAGGCTGCCAGGTTCAGCAATTCTGGGAGTGTTTTTGCAGCCTTGTCATCAGAATCTGCACGACGGGAAATCCTCTTGTATGATATCCAATCTTGTCATTTAGAATCAAAGTTGTCAGATACATATGCAACTTCTACAGGGCGGGGTCATGTTTATTCTTTAATCCATTTTAACCCTTCTGACTCAATGTTGCTTTGGAATGGTGTTTTATGGGACCGGAGGGTTTCTAGGCCTGTTCATCGCTTTGATCAGTTTACAGACTATGGTGGTGGAGGCTTTCATCCTGCTGGCAACGAGGTTATTATTAACTCTGAAGTCTGGGATTTGCGCAAGTTCAGATTGCTTCGCAGTGTACCTTCATTAGATCAAACATCAATAACATTCAATGCACGAGGTGATGTAATGTATGCAATCTTGAGGAGAAATCTTGAGGATGTAATGTCAGCAGTCCACACTCGTCGTGTCAAACATCCTCTGTTTGCGGCTTTCCGCACAGTGGATGCAATCAATTATTCAGACATTGCTACTATCCCTGTGGACCGATGTGTTCTTGATTTTGCAGCCGAGCCAACAGATTCATTTGTTGGTCTGGTTACTATGGATGATCAGGATGAGATGTATGCTTCAGCCAGAATCTATGAAATTGGTCGTCGGAGGccaactgatgatgattctgatcctgatgatgctgaaagtgaggaggaagatgaggatgatgacgatgatgatgttgatgtagatccccttttaggccctggtcttggtggtgatagtgcgagtgatgctgatgacttgagcaatgatgacgatgatgatgacagcgcgagcgatctcgatgaagatgaagatggagatttcattttggatgatgtagACTTCGATGAAGGACCTGGCATATTGGAGATTGTGACAGAAGGTGACGAGGATGATGATGATAGTCAGATACTTGAGTCCTTAAGTAGTGACGATGAGGATTTTGTTGGTAATGGCTTTGGGTATTAA 5808 0.423 MEDQANHATPPRDEEEDSKKEEEELIAKVNKLMDKITSAPDNPKATVLHALASILETQESRYMDENGHSSSSNARAAHIIGRLGGLIRENDEFFELISSKFLLETRYSTSIQAAACRLLLCCSLTWIYPHVFEESVMENIKNWAMDDNPRVSAEEQNLKHNPDRREASDSEMLKTYSTGLLAVCLVGGGQIVEDVLTSGLSAKLMRYLRLRVLGETSSSQKDVTHITESRHASANTSGRGRDDGRGRFRQLLESNHLDDTRKIDERSLDDVTLERGPDRSISGQTCPDGSWIDGEPPDEFGEGADVREVDSDGEDRWRCRDIRDGRIKYGEHDDNVRDDSSRRRANRGWGRSRGKGRINEGTVESDPILSSPGSGSRLGLGRSVRDRSILRNADIRRVADSKKTLGRSPSSFEREDNDDCFQECRIGSKDITDLVRKAVQAAEAEARSANAPEEAVQAAGDAAADLVKTAASEEYKSSNDEEAAFLAASRAASTVIEAASAVEVSRISICDNTITENMSGKESETNEDVEEYFIPDTQSLAQLREKYCIQCLELLGEYVEVLGPVLHEKGVDVCLALLQQNSKHREASKVALLLPDVMKLICALAAHRKFAALFVDRGGMQKLLAVPRMAQTFFGLSSCLFTIGSLQGIMERVCALPSEVVYHVVELALHLLDCNQDQARKNAALFFAAAFVFRAVLDAFDSLDGLHKLLGLLNDAASVRSGVNSGALSLSNSGSLRNDRSSAEVLTSSEKQIAYHTCVALRQYFRAHLLVLVDSIRPNKSNRSAARNIPSVRAVYKPLDISNEAMDAVFLQLQKDRKLGPAFVRTRWLAVEKFLASNGHVTMLELCQAPPVERYLHDLLQYALGVLHIVTLVPSSRKMIVNVTLSNNRVGIAVILDAANIVSNHVDPEIIQPALNVLVNLVCPPPSISNKPAMVGQGQQLAPSQTSNGPPSEARDRNAERNVSDRAVHFTSQTDPRERNGESNAVDRGSAAGSSTLPVNSTPQTPVASATSGLVGDRRISLGAGAGCAGLAAQLEQGYRQAREAVRSNNGIKVLLHLLQPRIYSPPAALDCLRALSCRVLLGLARDDTIAHILTKLQVGKKLSELIRDSGSQTPGTEQGRWQTELSQAAIELIGIVTNSGRASTLAATDAATPTLRRIERAAIAAATPITYHSRELLLLIHEHLQASGMTQTASLLLKEAQLTPLPSLVAPSFLAQQPTSQEVSSTQIQWPSGRTPSGFLSNKLKVNAKDEDASLKSDSISAKKKSLTFSSSFHSRLQLYSQQLSVSKWSSTGKESSETSAVDTTSESLVKNNIDTGSLFKTPISLPAKRKLSDIKDIAMFSASGKRLNIGDQGLRSPICSSAIRKSSLQTDAVGLVTPICNLRNQQSRCMGDFVDENQYNTPNTGQMTPSSQVLNDLQPNNPERVTLDSLVVQYLKHQHRQCPAPITTLPPLSLLHPHVCPEPKRSLDAPSNVTARLGTREFKYMYGGVHGNRRDRQFIYSRFRPGRPCRDDAGALLTCITFVGDSSHIAVGSHNGELKFFDSNNSNVVESYTGHQSPLTLVQSFVSGETQLLLSSSSQDVRLWDASSILGGPSHSFEGCKAARFSNSGSVFAALSSESARREILLYDIQSCHLESKLSDTYATSTGRGHVYSLIHFNPSDSMLLWNGVLWDRRVSRPVHRFDQFTDYGGGGFHPAGNEVIINSEVWDLRKFRLLRSVPSLDQTSITFNARGDVMYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDRCVLDFAAEPTDSFVGLVTMDDQDEMYASARIYEIGRRRPTDDDSDPDDAESEEEDEDDDDDDVDVDPLLGPGLGGDSASDADDLSNDDDDDDSASDLDEDEDGDFILDDVDFDEGPGILEIVTEGDEDDDDSQILESLSSDDEDFVGNGFGY 1935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01500 1935 MobiDBLite consensus disorder prediction 219 234 - -
Cca03g01500 1935 PANTHER VPRBP PROTEIN-RELATED 13 259 IPR033270 GO:0016567
Cca03g01500 1935 PANTHER VPRBP PROTEIN-RELATED 319 957 IPR033270 GO:0016567
Cca03g01500 1935 PANTHER VPRBP PROTEIN-RELATED 1291 1815 IPR033270 GO:0016567
Cca03g01500 1935 PANTHER VPRBP PROTEIN-RELATED 991 1277 IPR033270 GO:0016567
Cca03g01500 1935 PANTHER BNAA03G51310D PROTEIN 1291 1815 - -
Cca03g01500 1935 PANTHER BNAA03G51310D PROTEIN 991 1277 - -
Cca03g01500 1935 PANTHER BNAA03G51310D PROTEIN 13 259 - -
Cca03g01500 1935 PANTHER BNAA03G51310D PROTEIN 319 957 - -
Cca03g01500 1935 MobiDBLite consensus disorder prediction 219 246 - -
Cca03g01500 1935 MobiDBLite consensus disorder prediction 987 1011 - -
Cca03g01500 1935 Gene3D - 1505 1829 IPR015943 GO:0005515
Cca03g01500 1935 MobiDBLite consensus disorder prediction 1815 1935 - -
Cca03g01500 1935 MobiDBLite consensus disorder prediction 330 346 - -
Cca03g01500 1935 MobiDBLite consensus disorder prediction 1 23 - -
Cca03g01500 1935 MobiDBLite consensus disorder prediction 1864 1921 - -
Cca03g01500 1935 MobiDBLite consensus disorder prediction 300 314 - -
Cca03g01500 1935 MobiDBLite consensus disorder prediction 930 1012 - -
Cca03g01500 1935 SMART Lish 1173 1205 IPR006594 GO:0005515
Cca03g01500 1935 Coils Coil 12 35 - -
Cca03g01500 1935 SMART WD40_4 1504 1544 IPR001680 GO:0005515
Cca03g01500 1935 SMART WD40_4 1547 1587 IPR001680 GO:0005515
Cca03g01500 1935 SMART WD40_4 1592 1630 IPR001680 GO:0005515
Cca03g01500 1935 MobiDBLite consensus disorder prediction 268 314 - -
Cca03g01500 1935 MobiDBLite consensus disorder prediction 330 380 - -
Cca03g01500 1935 SUPERFAMILY WD40 repeat-like 1519 1740 IPR036322 GO:0005515
Cca03g01500 1935 MobiDBLite consensus disorder prediction 932 953 - -
Cca03g01500 1935 ProSiteProfiles LIS1 homology (LisH) motif profile. 1173 1205 IPR006594 GO:0005515
Cca03g01500 1935 MobiDBLite consensus disorder prediction 1828 1849 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01500 1531 1737 U-box Gene Family AT2G33340 25.446 4.85e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01500 K11789 - gmx:100796030 3063.86