Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01483 ATGGCGGTGGAGTTAATGGGGTTCCCCAAAATGGAGGAGCAGAAAGCAATTCAAGAGGCAGCATCGGAGGGCCTCAAGGGAATGGAAGACCTCATCGGTCTCCTCTCCCACCAACCCTCTCACCTCCACACTGACCTCACCGACGTAACCGTTTCCAACTTCAAAAAACTCATCTCCCTTCTCAAACGCACCGGCCACGCCCGTTTCCGCCGCGCACCTCTCCCTGCCCCGCCGCCTCAGAGTTTAACTCTGGATTTTACCAAACCTAACATCTTCCCCTCTTCCTCCAAGTCCCACTCCCTGGAACTGGAATTCTCGAAAGAAACCTTGAGCGTCTCCTCCAACTCCTCCAGCATCTCCGACGCCAAACTAGGATCCTCCCTCTTCCGCACCCCGCCCTCCGCCGGAAAACCACCTCTCTCCTCCGCGGCGCCCACCAAGAAGAGGTGCCACGACCACTCGGACGACCTCTCGGCCTCCAACAAGTGCCACTGCGTCAAGAGAAGGAAGAATCGCGTGAAGAAGACGATAAGAGTGGCGGCGATTAGTTCGAAGATCGCGGATATTCCAGCGGACGAGTACTCGTGGAGGAAGTACGGGCAGAAGCCGATCAAGGGATCACCGTACCCGAGggggtattataagtgcagtacggtgagagggtgtccggcgaggaaacacgtggagcgtgcttcggacgatcccacgatgttgattgtgacgtacgagggggagcaccgtcactccATTCAGACCGCGATGCAGGATAACATATTCGACTCAACGTGA 789 0.4816 MAVELMGFPKMEEQKAIQEAASEGLKGMEDLIGLLSHQPSHLHTDLTDVTVSNFKKLISLLKRTGHARFRRAPLPAPPPQSLTLDFTKPNIFPSSSKSHSLELEFSKETLSVSSNSSSISDAKLGSSLFRTPPSAGKPPLSSAAPTKKRCHDHSDDLSASNKCHCVKRRKNRVKKTIRVAAISSKIADIPADEYSWRKYGQKPIKGSPYPRGYYKCSTVRGCPARKHVERASDDPTMLIVTYEGEHRHSIQTAMQDNIFDST 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01483 262 PANTHER WRKY PROTEIN 10 251 - -
Cca03g01483 262 MobiDBLite consensus disorder prediction 124 157 - -
Cca03g01483 262 SMART WRKY_cls 190 250 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca03g01483 262 SUPERFAMILY WRKY DNA-binding domain 188 250 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca03g01483 262 Gene3D WRKY domain 174 250 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca03g01483 262 ProSiteProfiles WRKY domain profile. 185 251 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca03g01483 262 Pfam WRKY DNA -binding domain 192 248 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca03g01483 262 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 10 251 IPR044810 GO:0003700
Cca03g01483 262 Pfam Plant zinc cluster domain 147 188 IPR018872 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01483 Cca-Chr3 33316919 33318262 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01483 1 258 WRKY Transcription Factor Family AT2G24570 55.449 4.75e-99 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Cca03g01483 WRKY 3.5e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01483 - - gmx:100127394 374.4