Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01479 atggctactgatttgaatataggaattgttgtgacatgtttccggacatttgctgatgttttctatctgctcaacatgggcataaagttcagaactgcctacgtatcaccaagttcaagggtttttggtaggggtgagcttgttatggatcctaggttgattgcaaggaggtacttgagatcagagttcttccttgatcttgttgctacactgcctcttccccagattgtgatttggtttattatgccagcaattaggagctcacattctgatcataccaacaatgcacttgtactgattgttctgcttcaatatgtccccagattatatttgattttcccattaagttctcagattattaaagccaccggtgtagttacaaagacggcctgggctggagctgcttacaatcttttactttacatgttagctagtcatgtcttgggggcatcatggtacttgttatcaattgaaagacatgctacttgctggaaatctgaatgcagaaaagaaagccttcctgtaaaatgtgctcttaagtacttagattgcggtactttaaacaatgacgatcgcatgaagtgggtaaacactacttctgtgtttggtaaatgcaatccagaaaatagcatcagtttcaactatggaattttcggaaatgcagtgGAAAATAATGTTGTCTCCTCTGTGTTTATAGAGAAGTATCTCTATTGTCTGTGGTGGGGCTTGCAGAACTTGAGTTCCTATGGCCAGAGTTTGACTACAAGCACATTCGTTTGGGAAACTGCATTTGCAATACTCATAGCTATTCTGGGTCTGGTTTTGTTTGCCCACTTAATTGGTAACATGCAGACCTATTTGCAATCTATTACTGTGAGGCTTGAAGAGTGGAGACTCAAGCGACGTGACACTGAAGAATGGATGAGACACCGCCAACTCCCACAAAATCTCAGAGAGCGTGTCCGAAGATTTGTTCAGTACAAGTGGCTAGCAACTCGTGGGGTTGATGAAGAAACAATCCTACGTGGCCTGCCTACTGATCTACGTAGAGATATCCAACGCCACCTTTGCTTGGACCTTGTTCGACGTGTTCCCTTTTTCTCACAAATGGATGATCAGCTACTTGATGCAATATGTGAGCGGTTGGTATCATCCTTGAGTACTCAAGGCACATGCATAGTCAGAGAAGGAGACCCGGTTACAGAGATGCTTTTTATCATCAGAGGGAGACTCGAAAGCTCAACCACAAATGGAGGCAGAACTGGTTTCTTCAACTCTATTACCTTGAGGCCTGGTGATTTCTGTGGAGAAGAGCTACTTGCATGGGCATTGCTTCCAAAATCCACTCTCAACTTGCCTTCTTCTACAAGAACAGTCAAAGCCCTTGTGGAAGTGGAAGCCTTTGCACTAAGAGCAGAAGATCTCAAGTTTGTGGCCAATCAGTTCAGGCGTCTCCACAGCAAGAAGTTACAGCACACTTTCCGTTACTATTCTCACCATTGGAGAACATGGGCTGCATGCTTCATTCAGGCTGCATGGCGCCGGTTCAAGAAGAGAATGTTGGCAAAGAGCCTTAGTTTGAGGGAATTCCAGTCCTTCAACTATGATGAACAAATCAGGGATCAAATGGAGCACAAGGACGAAGAGCACAGTGCAGTGACTTCAAACACTGCACAAGTGAAACAGAACCTAGGAGTCACTATACTGGCTTCAAGATTCGCTGCAAACACAAGGAGAGGGGCTCAGAAGATCAAGGATGTAGAGATGCTCAAGTTGCAAAAGCCTGAAGAGCCAGACTTTTCAGTAGAGCCGGATGATGATTag 1824 0.2895 MATDLNIGIVVTCFRTFADVFYLLNMGIKFRTAYVSPSSRVFGRGELVMDPRLIARRYLRSEFFLDLVATLPLPQIVIWFIMPAIRSSHSDHTNNALVLIVLLQYVPRLYLIFPLSSQIIKATGVVTKTAWAGAAYNLLLYMLASHVLGASWYLLSIERHATCWKSECRKESLPVKCALKYLDCGTLNNDDRMKWVNTTSVFGKCNPENSISFNYGIFGNAVENNVVSSVFIEKYLYCLWWGLQNLSSYGQSLTTSTFVWETAFAILIAILGLVLFAHLIGNMQTYLQSITVRLEEWRLKRRDTEEWMRHRQLPQNLRERVRRFVQYKWLATRGVDEETILRGLPTDLRRDIQRHLCLDLVRRVPFFSQMDDQLLDAICERLVSSLSTQGTCIVREGDPVTEMLFIIRGRLESSTTNGGRTGFFNSITLRPGDFCGEELLAWALLPKSTLNLPSSTRTVKALVEVEAFALRAEDLKFVANQFRRLHSKKLQHTFRYYSHHWRTWAACFIQAAWRRFKKRMLAKSLSLREFQSFNYDEQIRDQMEHKDEEHSAVTSNTAQVKQNLGVTILASRFAANTRRGAQKIKDVEMLKLQKPEEPDFSVEPDDD 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01479 607 Pfam Ion transport protein 9 293 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cca03g01479 607 Pfam Cyclic nucleotide-binding domain 389 477 IPR000595 -
Cca03g01479 607 Gene3D Helix hairpin bin 294 357 - -
Cca03g01479 607 Gene3D - 3 292 - -
Cca03g01479 607 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 14-RELATED 1 603 - -
Cca03g01479 607 Gene3D Jelly Rolls 364 484 IPR014710 -
Cca03g01479 607 ProSiteProfiles cAMP/cGMP binding motif profile. 366 449 IPR000595 -
Cca03g01479 607 SUPERFAMILY Voltage-gated potassium channels 5 288 - -
Cca03g01479 607 CDD CAP_ED 366 497 IPR000595 -
Cca03g01479 607 SMART cnmp_10 366 497 IPR000595 -
Cca03g01479 607 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 1 603 - -
Cca03g01479 607 SUPERFAMILY cAMP-binding domain-like 296 488 IPR018490 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01479 Cca-Chr3 33261278 33265203 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01479 1 603 Ion Channels AT2G24610 76.721 0.0 972
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01479 K05391 - gmx:100803334 1170.99