Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cca03g01475 | ATGCAACAGAGGCTCAAGTTGCAGCAACAACAAGCCCTCATGCAGCAAGCCTTGCTTCAGCAACAGCAGATGTACCACCCTGGCATGCTCGCCGCTGCTATGTCTCAGATGGAGCCTGTTCCAAGTGGAAATTTGCCCCCTGGTTTTGATACTTCTGCTTGCCGTAGCGTTTATGTAGGAAATATTCATGTAAATGTCACCGATAAACTTCTTGCAGAAGTTTTTCAGAGTGCTGGTCCTCTTGCTGGCTGCAAGCTCATAAGAAAAGAAAAGTCCTCTTATGGTTTTGTGGACTACCATGATCGAGCATCTGCAGCCCTTGCAATAATGACGTTGCATGGACGACAACTGTATGGTCAAGCACTTAAGGTGAATTGGGCATATGCTAATAGCAGTAGGGAGGATACGTCAGGGCACTTCAATATATTTGTTGGTGATTTGAGTCCAGAGGTTACTGATGCAACTTTATTTGCTTGCTTCTCAGTCTATCCTAGTTGTTCTGATGCAAGGGTTATGTGGGATCACAAAACTGGTCGGTCAAAAGGATATGGTTTTGTTTCTTTCCGTGACCATCAGGATGCTCAAAGTGCCATAAATGATATGACAGGTAAGTGGCTGGGAAATAGGCAAATACGTTGCAACTGGGCAACAAAGGGTGCTGGTGCCAGCTCCAATGAAGAGAAGAACAGTGACACCCAAAATGCTGTTGTGCTTACAAATGGATCTTCAGATGGAGGTCAAGATAATAACAATGAGGATGCTCCGGAAAACAATCCTTCATACACCACAGTTTATGTTGGCAACCTTCCCCATGATGTAACACAAGCTGAACTACATTGTCAGTTTCACACATTGGGGGCTGGGGTAATTGAGGAGGTCCGAGTTCAGAGGGATAAGGGTTTTGGATTTGTCAGATACAACACTCATGAGGAAGCTGCGTTGGCCATTCAAATGGCTAATGGAAGAATAATTCGTGGGAAGTCTATGAAGTGTTCATGGGGTAGTAAACCAACTCCTCCTGGAACAGCTTCAAATCCACTACCTCCTCCTGCTCAACCATATCAAATACTCCCTACTGCAGGGATGAATCAAGGGTATTCTCCTGCTGAGTTGTTGGCTTATCAGCGCCAACTGGCCTTGAGTCAGGCTGCTGTATCTGGTCTTTCAGGTCAAGCTCTTCTGCAAATGACTGGACAACACGGTCTAGCTCCTGCTTCAATGGGCGTAAACTCTGGGGGATCTCAAGCCATGTATGATGGATATACCGGTAACTCATCTAGACAGCAGCTTATGTACTATCGTTGA | 1305 | 0.4559 | MQQRLKLQQQQALMQQALLQQQQMYHPGMLAAAMSQMEPVPSGNLPPGFDTSACRSVYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIRKEKSSYGFVDYHDRASAALAIMTLHGRQLYGQALKVNWAYANSSREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDMTGKWLGNRQIRCNWATKGAGASSNEEKNSDTQNAVVLTNGSSDGGQDNNNEDAPENNPSYTTVYVGNLPHDVTQAELHCQFHTLGAGVIEEVRVQRDKGFGFVRYNTHEEAALAIQMANGRIIRGKSMKCSWGSKPTPPGTASNPLPPPAQPYQILPTAGMNQGYSPAELLAYQRQLALSQAAVSGLSGQALLQMTGQHGLAPASMGVNSGGSQAMYDGYTGNSSRQQLMYYR | 434 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cca03g01475 | 434 | PANTHER | TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED | 4 | 431 | - | - | |
Cca03g01475 | 434 | Gene3D | - | 239 | 340 | IPR012677 | - | |
Cca03g01475 | 434 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 142 | 212 | IPR000504 | GO:0003723 | |
Cca03g01475 | 434 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 57 | 123 | IPR000504 | GO:0003723 | |
Cca03g01475 | 434 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 264 | 329 | IPR000504 | GO:0003723 | |
Cca03g01475 | 434 | CDD | RRM2_PUB1 | 141 | 215 | - | - | |
Cca03g01475 | 434 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 262 | 336 | IPR000504 | GO:0003723 | |
Cca03g01475 | 434 | CDD | RRM3_TIA1_like | 262 | 336 | - | - | |
Cca03g01475 | 434 | SUPERFAMILY | RNA-binding domain, RBD | 251 | 345 | IPR035979 | GO:0003676 | |
Cca03g01475 | 434 | MobiDBLite | consensus disorder prediction | 218 | 261 | - | - | |
Cca03g01475 | 434 | Gene3D | - | 1 | 137 | IPR012677 | - | |
Cca03g01475 | 434 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 140 | 218 | IPR000504 | GO:0003723 | |
Cca03g01475 | 434 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 55 | 129 | IPR000504 | GO:0003723 | |
Cca03g01475 | 434 | SUPERFAMILY | RNA-binding domain, RBD | 134 | 230 | IPR035979 | GO:0003676 | |
Cca03g01475 | 434 | SUPERFAMILY | RNA-binding domain, RBD | 40 | 133 | IPR035979 | GO:0003676 | |
Cca03g01475 | 434 | SMART | rrm1_1 | 263 | 332 | IPR000504 | GO:0003723 | |
Cca03g01475 | 434 | SMART | rrm1_1 | 56 | 125 | IPR000504 | GO:0003723 | |
Cca03g01475 | 434 | SMART | rrm1_1 | 141 | 214 | IPR000504 | GO:0003723 | |
Cca03g01475 | 434 | PANTHER | OLIGOURIDYLATE-BINDING PROTEIN 1B-LIKE ISOFORM X1 | 4 | 431 | - | - | |
Cca03g01475 | 434 | Gene3D | - | 138 | 238 | IPR012677 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Cca03g01475 | Cca-Chr3 | 33215480 | 33222630 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Cca03g01475 | 47 | 336 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 26.578 | 1.69e-22 | 98.2 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cca03g01475 | K13201 | - | gmx:100777108 | 826.239 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Cca03g01475 | 03 | 33215480 | 33222630 | Cca03g01475 | 03 | 33215480 | 33222630 | ECH |