Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01471 ATGTCACCCCATAAACCATTAAGTCTTGGTTTCTTATGCACATGCCTTTCATTTCTCAATTTTCCTCATTCTCTCTGCTTCCTAACTCACCAACCAAAACCTATTTCAGTTTTCATCTCCATTATCATGGCACATAAAAGAGAATATTACTGTCTTCTCATGCTCTTTACTTGTTTCTTGCCATCGTTGGCTGACAATGCTGAAGTTCTGATGAACTTCAAAAGCCACTTTTCCACAGCTGATGCTTTAAACAACTGGGGGAACCAATCAATCGACTTGTGCAGCTGGACTGGTATATTGTGCTTCAATCAAAAATTTCATGGCCTGAGATTAGAGAACATGGGACTAAGTGGCACCATTAACGTGGACACGTTGCTTGAGTTGTCCAATTTGAACAGTTTTAGTGTCATTAACAACAACTTTGAGGGGCCAATGCCTGCATTCAAGAAGCTTGTGAGTTTAAGGGCATTGTTTCTGAGCAATAATAAATTCTCTGGTGAAATTCAAGATGATGCTTTTGAAGGCATGATACGTCTCAAGAGAGTGTTCTTGGCTGAAAATGAGTTCACGGGTCATATTCCTACATCCCTTGCTAAATTGCCTAAACTTTTGGATGTGGACTTGCATGGAAATAGTTTTGGAGGCAATATACCGGAATTTCAACAGAGGGATTTCAGAGTGTTTGATTTGTCTAACAACAAGTTGGAGGGTAAAATACCAGAAAGCTTAAGCAACAAGGATCCAAAATCATTTGCTGGCAATGAAGGTCTATGTGGAGAACCTCTAAGCCCCTGCATGGGAAGTCCCCCCCCACCAACTTCGAGCAAAAACGAAAAAAATGAGAAAAACCACATCCTTTTAACAGCTATTGTAGTGGTGGGTGTGATTGTGTTGGCTTTAATACTAGCACTCCTGATCATCCGTTACCGTCGAAAGAAACACGTGTCGGTCGGGGATACACAACCCCATAGCGTTAATTCAGTTTCTAGTAGTGAGGGCAAATCCATTGTTGTGACAGGAGAACCCAATAAGAGTGAAGATGGGGGGTTGAACTTTGTTAGCAGCGAAAAGGGGGCGTTTGAATTGCAAGACTTGCTTAGGGCCTCAGCTGAGGTTCTGGGGAGTGGCAGTTTTGGATCCACGTACAAGGCCTTGCTTCTGAACGGACCAGTTGTGGTGGTGAAGAGATTCAAGCACATGAACAACGTTGGGAAGAAAGAGTTTTATGAGCACATGAAAAGGCTTGGAAGGTTGTCACACCCTAATCTACTCCCTCTTGTTGCATTTTACTACGGGAAAGAAGAGAAGCTTCTGGTGCATGACTTTGCTCAAAATGGCAGCTTGGCTAGTCATCTTCATGGCAGAGGTGGTTGTGTGTTGAACTGGCCAACTCGTTTGAAGATCATAAAAGGAGTGGCCAAAGGGTTAGCTTACCTTTACGAAGAGTTCCCCAACCAAGCCTTACCTCACGGTCATCTAAAATCATCGAATGTTGTGTTGGACCATTCACTGGAGCCTCGTTTGGCAGAGTATGGAGTGGTTCCAGTGGTGGACAAGAGCCACGCTCAGCAGTTCATGGTGGCATACAAGTCTCCAGAGGTGAGCCAGTTTGGAAGACCAAGCGAGAAGAGTGATATTTGGTGTTTGGGGATCCTGATTCTGGAGCTTCTGACGGGGAGGTTCCCTGCCAATTATCTGAGGCATGGGAAGGATGCAAGTGAGGATTTGGCTGCATGGGTGAACTCCATTGTGAGAGAAGGGTGGAGTGGTGAGGTGCTTGATAAGGATATTCCCGAGAgagggagtggagagggtgagatactgaagctgctgaggattggaatggggtgctgtgagtggagtttggagaggaggtggggttggagggaggcagtggCAAAGATTGAGGAGTTGAGGGAGACTGACGGTCATGCTGATGCTGATCATTTCTACTCATCATCTATGAGTTTGGATGACTCTGTTTCTATTTCTAAATAG 1998 0.4199 MSPHKPLSLGFLCTCLSFLNFPHSLCFLTHQPKPISVFISIIMAHKREYYCLLMLFTCFLPSLADNAEVLMNFKSHFSTADALNNWGNQSIDLCSWTGILCFNQKFHGLRLENMGLSGTINVDTLLELSNLNSFSVINNNFEGPMPAFKKLVSLRALFLSNNKFSGEIQDDAFEGMIRLKRVFLAENEFTGHIPTSLAKLPKLLDVDLHGNSFGGNIPEFQQRDFRVFDLSNNKLEGKIPESLSNKDPKSFAGNEGLCGEPLSPCMGSPPPPTSSKNEKNEKNHILLTAIVVVGVIVLALILALLIIRYRRKKHVSVGDTQPHSVNSVSSSEGKSIVVTGEPNKSEDGGLNFVSSEKGAFELQDLLRASAEVLGSGSFGSTYKALLLNGPVVVVKRFKHMNNVGKKEFYEHMKRLGRLSHPNLLPLVAFYYGKEEKLLVHDFAQNGSLASHLHGRGGCVLNWPTRLKIIKGVAKGLAYLYEEFPNQALPHGHLKSSNVVLDHSLEPRLAEYGVVPVVDKSHAQQFMVAYKSPEVSQFGRPSEKSDIWCLGILILELLTGRFPANYLRHGKDASEDLAAWVNSIVREGWSGEVLDKDIPERGSGEGEILKLLRIGMGCCEWSLERRWGWREAVAKIEELRETDGHADADHFYSSSMSLDDSVSISK 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01471 665 Gene3D Ribonuclease Inhibitor 174 268 IPR032675 -
Cca03g01471 665 ProSitePatterns Protein kinases ATP-binding region signature. 373 395 IPR017441 GO:0005524
Cca03g01471 665 ProSiteProfiles Protein kinase domain profile. 367 665 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g01471 665 Gene3D Phosphorylase Kinase; domain 1 337 442 - -
Cca03g01471 665 Pfam Leucine rich repeat N-terminal domain 65 101 IPR013210 -
Cca03g01471 665 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 49 645 - -
Cca03g01471 665 MobiDBLite consensus disorder prediction 260 279 - -
Cca03g01471 665 SUPERFAMILY Protein kinase-like (PK-like) 371 637 IPR011009 -
Cca03g01471 665 Gene3D Ribonuclease Inhibitor 65 173 IPR032675 -
Cca03g01471 665 SUPERFAMILY L domain-like 70 246 - -
Cca03g01471 665 Gene3D Transferase(Phosphotransferase) domain 1 443 658 - -
Cca03g01471 665 Pfam Protein kinase domain 370 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g01471 665 PANTHER LRR RECEPTOR-LIKE KINASE 49 645 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01471 Cca-Chr3 33192247 33195061 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01471 51 662 Receptor kinase-like Gene Family AT5G35390 47.105 0.0 548
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Cca03g01471 Pkinase 3.5e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01471 - - gmx:100803999 957.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01471 03 33192247 33195061 Cca03g01471 03 33192247 33195061 ECH