Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01459 ATGCAAAAGGAAAAGGGAGCAATTATGAAGGAGGGAACCGATATAGAAATGGAAGGACGTGGAAATGATGAAACCCTACCACCAGGATTTCGATTTCATCCCACCGATGAAGAACTTGTCACCTGCTATCTCCTAAATAAGATATCGGATTCTGGGTTTACAGGTAAAGCAATAACCGATGTAGATCTCAACAAATGTGAGCCATGGGAGCTACCAGGGAAGGCGAAGATGGGAGAAAAAGAATGGTACTTCTTCAGTCTGAGAGATCGTAAATACCCGACGGGTGTGAGAACGAATCGAGCAACGAACACGGGGTATTGGAAAACCACAGGAAAAGACAAGGAGATTCTGAACAGTGCAAATTCGGAGTTAATTGGAATGAAGAAGACATTAGTTTTCTACAAAGGGAGAGCTCCAAGAGGAGAGAAAAGCAACTGGGTCATGCATGAATATCGGATTCACTCCAAATCCACCTATAGAACTAACAGGCAGGATGAATGGGTGGTTTGCAGGGTATTCAAGAAGAGTGGTGGTGCAAAGAAGTACCCTTCTTCCAACCATGCAAGATCAGTGAATCCTTACAGCTTGGAAATAGGACCAAATAATTTTATGGCACCACAAATGATGCAACTTGGAGATCCTGCTGCTCATTTCCTTTATGGACGCAATCATAATCACATGAGCACCACTGTAGAGTTAGCTGAACTTGCTAGGGTTTTGAGAGGAGGTGGAGCAACAAGTAGTGTCAACGTACCAATGCAACCCCACTTAAGCTACCCTACTTTATcagcagcagcagcatcagcagcgggaggagGATTCACCATTTCAGGTCTCAATTTGAATCTTGGAGGAGCCATAGCCACAACACAACCCATTTTGCCACTTTCGCCTCCTCCTGTTCATACAATGGCTCAACCACTTGATGTCAATTCAAGCATGATCACATCCACTTCTCTTGGTGCTGAGAATGTAGCAGCTGGTTATGGATCAGAAATGAGCAACATCAATTCTCATGGCAATAGGTTTATGGGCATGGAACATTGCATGGATCTAGACAACTATTGGCCTTCCTACTAA 1080 0.4231 MQKEKGAIMKEGTDIEMEGRGNDETLPPGFRFHPTDEELVTCYLLNKISDSGFTGKAITDVDLNKCEPWELPGKAKMGEKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEILNSANSELIGMKKTLVFYKGRAPRGEKSNWVMHEYRIHSKSTYRTNRQDEWVVCRVFKKSGGAKKYPSSNHARSVNPYSLEIGPNNFMAPQMMQLGDPAAHFLYGRNHNHMSTTVELAELARVLRGGGATSSVNVPMQPHLSYPTLSAAAASAAGGGFTISGLNLNLGGAIATTQPILPLSPPPVHTMAQPLDVNSSMITSTSLGAENVAAGYGSEMSNINSHGNRFMGMEHCMDLDNYWPSY 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01459 359 ProSiteProfiles NAC domain profile. 26 175 IPR003441 GO:0003677|GO:0006355
Cca03g01459 359 Gene3D NAC domain 35 178 IPR036093 GO:0003677|GO:0006355
Cca03g01459 359 Pfam No apical meristem (NAM) protein 27 153 IPR003441 GO:0003677|GO:0006355
Cca03g01459 359 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 18 356 - -
Cca03g01459 359 SUPERFAMILY NAC domain 24 175 IPR036093 GO:0003677|GO:0006355
Cca03g01459 359 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 18 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01459 Cca-Chr3 33061919 33064745 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01459 18 359 NAC Transcription Factor Family AT2G24430 52.991 3.70e-114 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Cca03g01459 NAM 1.5e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01459 - - gmx:100804931 594.734
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01459 03 33061919 33064745 Cca03g01459 03 33061919 33064745 ECH