Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01454 ATGGTAGCTGTTCAAACAAATCGCATGGAAAGAGAACGAACACGGAAACGCCCTCGTCTCGCCTGGGACGTAGCCCCTCCGTCACAACCCGAGGCGCAACGGGCTCTTCCGGTGCCCGGTGACGAAGGATTCGAAAGAAAACACGTTTCGCCTCCGAGAAGGGACGACGATCGCGAAGGCCATTATGTCTTCAATCTCGGCGAAAATCTCACTCCTAGATATAAAATCCTCAGCAAGATGGGTGAAGGCACATTTGGTCGGGTTTTGGAATGTTGGGATCGCCAAACCAGAGAATATGTGGCCATCAAGGTAGTTAGAAGCATTCGGAAATATCGAGATGCAGCTATGCTTGAAGTTGACGTGCTTCAACATCTAGCGAAGAATGATAGTGGAAGCTCACGATGTGTGCAGATCCGAAATTGGTTTGATTACCGAAATCACATATGCATTGTCTTTGAGAAGCTTGGACCAAGCTTATTTGATTTTCTAAAGAGAAATAAATACTGCCCATTCCCTGTGGATCTTGTTCGGGAATTTGCACGACAGCTTTTGGAATCTGTAGCATGTCTGTGGATTATTTATGGCCTTCAGTTTATTTCTCATGTTTCATTCACAAGTCTCTTTCTTACAAATCAAACCATGGCTTTTCCCTTGGTCTGCTTTCTTTGTCCAGGGATGTAG 681 0.4567 MVAVQTNRMERERTRKRPRLAWDVAPPSQPEAQRALPVPGDEGFERKHVSPPRRDDDREGHYVFNLGENLTPRYKILSKMGEGTFGRVLECWDRQTREYVAIKVVRSIRKYRDAAMLEVDVLQHLAKNDSGSSRCVQIRNWFDYRNHICIVFEKLGPSLFDFLKRNKYCPFPVDLVREFARQLLESVACLWIIYGLQFISHVSFTSLFLTNQTMAFPLVCFLCPGM 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01454 226 SMART serkin_6 74 219 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g01454 226 Pfam Protein kinase domain 74 190 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g01454 226 MobiDBLite consensus disorder prediction 1 60 - -
Cca03g01454 226 Gene3D Phosphorylase Kinase; domain 1 61 154 - -
Cca03g01454 226 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 47 189 - -
Cca03g01454 226 ProSiteProfiles Protein kinase domain profile. 74 226 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g01454 226 PANTHER SERINE/THREONINE-PROTEIN KINASE AFC2 47 189 - -
Cca03g01454 226 SUPERFAMILY Protein kinase-like (PK-like) 61 190 IPR011009 -
Cca03g01454 226 Gene3D Transferase(Phosphotransferase) domain 1 128 190 - -
Cca03g01454 226 MobiDBLite consensus disorder prediction 40 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01454 Cca-Chr3 33032242 33035949 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01454 58 199 EF-hand Containing Proteins AT5G22840 31.081 1.05e-18 82.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CLK Cca03g01454 Pkinase 6.6e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01454 K08287 - gmx:100782453 360.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01454 03 33032242 33035949 Cca03g01454 03 33032242 33035949 ECH