Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01444 ATGCGCATGAATTTTGTTCACCTTCCAAGTCATAACCACTGTTTTTATACAAACAAAAGGAAAACAATGTTTGCAGTTGCACCATATTATTCTCCGGCCACTCCTCCGCCGTCGCCGGAACCAGCTCCGCCACCACTCCGCTCCTCGCCGTCACCATCAATGTCTCAGACGCCTCCGGTCACCTCGCCGTTGCCGGAAACTTTACTCCTTCCGGAttcgccaccaccgtcttcactttcgccacttcctccgacaatgccgttgttgccgtctccgtcgccggagtctctgccaccgccgtttccaccgtttttcgttacaccgttgtctccggctccaaccgccgcatctccgccaccgccgtttccatttgccacggcacctgcaacgacaacgtttccaccgtTCGAAGTTACACCATCGCCGCCATCTCCAGCCGCCACTTTTCCACCTACATTGTCAAATGAAATGAATCCGCCACCGCTTCCGGCGGCGGACACGGCGACGGAGACTGTTCCTCCGCCGCCTCTATTAACTGCGTTCACGGAACCTGACTTGGCAACGCCGTCGAGAACACCAAGTGAAAGTTTGCCGGTGGCTGTGGAAGTTCAGAAGCCTTCAACATTCCACGTGTCAAGTGGACTCATCGTTGGGCTTGTAATTGGAGTTATCGTTTTCGTGTTTGTTTTTACCGTTGGATCAGTTCTATGCAGACATAGGAAGAAAAACAAACGCAAGAAGCTGTTTACCCCTCACTATAAGGAACCGTCACCATATGTTGAATCCAAGGGGTCTCATGTTATTCGAGTGCAATCAAATCCAACGCCGCCACCACATCTCACTGAGGGTGGTGGAGCTTCTGGTTCTTTTAACTCAGTGTCTGTGAAAGCAATCCCAAACCGTGCTCCAAGGGTTGGCTTTGGTTCCGTGAGTGGTATTTTCACATATGATGAAATATTAGTGGCCACTAATTGTTTCTCTGAGTCAAACCTTCTTGGAGAAGGTGGTTTTGGGTATGTGTACAAAGGAATTCTCCCTTGTGGAAAGGAAATTGCAGTTAAGCAGTTAAAACCAGGGAGCCAACAAGGAGAGAGAGAATTTCAAGCTGAGGTTGAGACCATTAGCCGAGTGCATCACAAACATCTTGTTGAATTGCTAGGATACTGCGTTACCGGGGCAGAGAGATTGCTTGTTTACGAATTTGTTCCAAATAACACGTTGGAATTCCACTTACATGGTATTGGGGAGGAGGGCAGCTTCTTAGAATGGACAACGAGAGTTAAAATTGCCTTGGGATCTGCAAAAGGGCTGGCATATCTACACGAAGATTGTAATCCGGCAATTATTCACCGTGATATTAAAGCATCTAATATTCTTCTTGATTTTAAGTTTGAACCCAAGGTTTCTGACTTTGGCCTGGCAAAAATCTTCCCTAACACTGACAGTTGCATTAGTCACCTCACCACCCGAGTGATGGGAACCTTTGGGTATCTGGCTCCAGAGTATGCATCAAGTGGTAAATTGACAGATAAATCAGATGTATATTCCTACGGTGTCATGCTTTTAGAACTTATAACGGGACGTCCACCAATCACTGCAACAGGATCAAGGAACAAGAGCCTGGTTGACTGGGCTAGGCCATTGCTTGCTCAAGCACTACAAGATGGTGACTTCAACGATCTTGTTGATCCAAGGTTGCAGCAAAATAATGAAGCTCAGGAAATGGTTAGAATGATTACCTGTGCAGCTGCTTGTGTGCGCCATTCAGCCAGGCTTAGACCTCGTATGAGCCAAATAGTTGGAGCCTTAGAAGGTGTGGTTTCTCTAACCGATCTAGTTGGAGATATTACACCGGGGCATACCACAATATACAATTGGTCAAATAGTTCAGATTATGATGCCAACCAATATCAGCAGGACATGAGAAATTTCAATTTGGCATTATCATGTCAGAAATATTGCTCCAGCGGTTATGGTCTTCACTGA 1986 0.4149 MRMNFVHLPSHNHCFYTNKRKTMFAVAPYYSPATPPPSPEPAPPPLRSSPSPSMSQTPPVTSPLPETLLLPDSPPPSSLSPLPPTMPLLPSPSPESLPPPFPPFFVTPLSPAPTAASPPPPFPFATAPATTTFPPFEVTPSPPSPAATFPPTLSNEMNPPPLPAADTATETVPPPPLLTAFTEPDLATPSRTPSESLPVAVEVQKPSTFHVSSGLIVGLVIGVIVFVFVFTVGSVLCRHRKKNKRKKLFTPHYKEPSPYVESKGSHVIRVQSNPTPPPHLTEGGGASGSFNSVSVKAIPNRAPRVGFGSVSGIFTYDEILVATNCFSESNLLGEGGFGYVYKGILPCGKEIAVKQLKPGSQQGEREFQAEVETISRVHHKHLVELLGYCVTGAERLLVYEFVPNNTLEFHLHGIGEEGSFLEWTTRVKIALGSAKGLAYLHEDCNPAIIHRDIKASNILLDFKFEPKVSDFGLAKIFPNTDSCISHLTTRVMGTFGYLAPEYASSGKLTDKSDVYSYGVMLLELITGRPPITATGSRNKSLVDWARPLLAQALQDGDFNDLVDPRLQQNNEAQEMVRMITCAAACVRHSARLRPRMSQIVGALEGVVSLTDLVGDITPGHTTIYNWSNSSDYDANQYQQDMRNFNLALSCQKYCSSGYGLH 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01444 661 ProSitePatterns Protein kinases ATP-binding region signature. 332 354 IPR017441 GO:0005524
Cca03g01444 661 MobiDBLite consensus disorder prediction 31 96 - -
Cca03g01444 661 Gene3D Transferase(Phosphotransferase) domain 1 402 612 - -
Cca03g01444 661 ProSitePatterns Serine/Threonine protein kinases active-site signature. 448 460 IPR008271 GO:0004672|GO:0006468
Cca03g01444 661 Gene3D Phosphorylase Kinase; domain 1 300 401 - -
Cca03g01444 661 ProSiteProfiles Protein kinase domain profile. 326 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g01444 661 SMART serkin_6 326 579 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g01444 661 CDD STKc_IRAK 332 605 - -
Cca03g01444 661 Pfam Protein kinase domain 327 589 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g01444 661 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK14 58 645 - -
Cca03g01444 661 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 58 645 - -
Cca03g01444 661 SUPERFAMILY Protein kinase-like (PK-like) 309 603 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01444 Cca-Chr3 32858608 32862795 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01444 206 655 Trihelix Transcription Factor Family AT5G38560 49.780 8.76e-144 432
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Cca03g01444 Pkinase 2.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01444 - - gmx:100810262 799.275