Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01439 ATGGAAGTCGATAGGACAATCCCCGTTGCATCAGATGGGGTTATAGATGGTGTTCAGAAAATTAGAGCTCTGCAAGGGAGGACTACTGGCCCTACGAGGCGCTCTACAAAAGGACAATGGACACCTGAGGAGGACGAAATTTTGCGGAAGGCAGTTCAACGTTTTAAAGGAAAGAACTGGAAAAAAATAGCGGAGTGCTTCAAGGATAGAACGGATGTACAATGTTTGCATAGGTGGCAGAAAGTCTTGAATCCAGAACTTGTCAAAGGTCCGTGGTCTAAAGAGGAGGATGAAATAATTATTGATTTGGTGAATAGATTCGGGCCTAAAAAGTGGTCTACTATCGCACAACACTTACCTGGACGTATCGGCAAGCAATGTCGAGAAAGGTGGCATAATCATCTTAATCCTACTATAAATAAGGAAGCATGGACGCAGGAAGAAGAGTTGGCTCTCATACGTGCACATCAGGTTTATGGGAACAGATGGGCGGAATTAGCGAAGTTATTGCCTGGAAGGACAGACAATGCTATAAAAAACCATTGGAACAGTTCTGTCAAAAAAAAATTGGAGTCCTACTTGGCATCGGGCTTGCTTACTCAGTTACAAACTGTACCACCAGTTGTTGGAAATTCGAATCAACCTATTGCTTCAACCTCTTCGATGTTGCAGCGGAATGGAGATGACAATTGTCCTAGGGGGATAGATGGAGAGGAAGTTTCGCAGTGTAGCCAGGAGTCAGCTAATGCTGGTCACTTGTCGTCAGCCAGAGAGACAAGCAGTGTTGTTTTACAAACTGGGGATGAGTACAGGCCAAATGAAGAACATAGTCAAGCATCCTGTTCAGAGCCATATTATGTGTCTCTGGATGAAGTTACCGCATCTCTTCCAGACATGACAGGCCATGAGATTTGCAATTCCCAATTCATTGAGCAGAAATATTCTCTCAATCCTATGAATTCCATAAATGGGGATAGTCGGCTTGATTTAACTGACTTGACCAATATTTCCTCCCTGGACTATGTGCAGGATTCATCGCAGTTGCAAAATGATTGCATAGCTCCCAGTGAAAGTCATGACATGGTGAATGTTCCGTTTCAGACTTCGGTGGGGTTAAGTGTTACTTCTCTGGAATCAATTAAAGCAGAACAAATGTTGATGTCTGATGAGGAATGTTGCAGAATTCTGTTTTCAGAGGCAATAAACGATGAATGCTTTTCTTCTGGAGATTATAATAAGGGTGTAAACATGATTGACTTGACAGGATGCAGCTCATTTCTTGGTCAGTCATCATTACCATCTGTCCCATCAGGGGTTTCTTCTACTGGTGATAGGTATCAACATGTGTATACTACCGAAGTCAATCAGTTGGTTGGGTCTGAGGATCAGCAGTTTGTCTCCAGAACACAAGATAACATAATTTATGCCAATGACTTATCCAGTTCTCCTTGTATCCAGAGGATAGACAGCGCGGAAATGCAAGAGCCATCAGATGTTGTGCAAGATAATTCAAAATTGGTCCCTGTAAATAGTTTTGGCTGTGGATCAGACGTTGAGCAAACTTCCTATCCAACGGATGAAAAGTCAAATGTGCATACAGAACAGGAGGAAACAGGTGCTCTATGTTATGAGCCTCCCCGCTTTCCAGCAAGCTTGGATATTCCTTTCTTAAGCTGTGATCTTGTACAGTCTGGGGGTGATATGCAGCAAGAATTCAGTCCCCTAGGTATCCGCCAATTTATGATGTCTTCTATGAACTGTCTAACTCCTTTTAGATTATGGGACTCGCCTTCCCATGGCAGTAGTCCAGATGCTTTGTTGAAAAGTGCAGCTAAAACCTTCACCAGTACACCATCTATATTAAAGAAACGTAACCGAGAGCTTTTATCTCCACTATCAGACAAAAGAATTGACAAGAAACTTGAGATTGAAATGACATCAACCTTGATAAAAAACTTTTCCCGATTGGATGTCATGTTTGATGACAATGAGACCCAGGGAGGAGATTCGCTTCCTCCATCTTCAGTACATAAAGGGGACTCTGGTGCCTCTGTTGAAGATAATAAAGAGAATTGTGGACAAGCTGTTAGAGTGGAGAAAAATAAGTCTGCAATTTTGGATGACGAAAAGTCAGAAAAAGATTTAGGTGATAGTAATTCTCAGGATGAGATTAAGCAGCAGCAACCTCTTGATGCTGATTCTGAGATAAAGAATGACGTTAGTGCTGCTGCTGAGACTGTGCAACAACCTTCTGGAATTTTGGTTGAACATGATATGAATGACCTGCTACTGTATTCTCCTGGTCAAGTTAAATTAAAATCAGAGAGAGTTCTTACTTTGAGTGCTAGAACTAAAAAAGGTTCAGGCTCAAGGATCAACTCACCATCTGTTTGGATAAAGGAGCGTGAAAGACTTTCAGTTGCTGTTACTTGTGTACAGTCTATCAGTTCATCAGGCCCAGGGGACAATTCGGGTGATCACACTGCAAAAGATGGTGATCTTGAAACATGTAGCATATTTGGTGGAACACCTTTTAGGAAAAGCATTGAATCTCCTTCGGCATGGAAATCTCCTTGGCCCTTCAGCACTTTTTTGTCTAGCCCCAGGATTGATACTGAAATTACAATTGAGGATTTTGGGTATTTCTTGAGCCCTGGTGACAGAAGCTACGATGCAATCGGATTGATGAAACAGATCAGTGAACAAACTGCTGCTCAATATGCCAGTGCTCATGAGATTTTAGGAAATGAAACTCCGAAGGCGTTACCCAAAGATGCGTCTGGAATCGACAGGGATGGAGACCAGGAAAATATCGATCCTCAGAATCAGCACAGGAACCATTCTCAGTTGGCTTCAAGTGCTTTGGTGGAGCGGCGTATACTTGACTTTAGCGAATGTGGAACTCCGGTGAAGGGTGAAAACAGCAAAACCTCAGCAATGAGTTTCTCAAGCCCGTCTTCGTATTTGTTGAAGGGCTTTAGATAG 2985 0.4255 MEVDRTIPVASDGVIDGVQKIRALQGRTTGPTRRSTKGQWTPEEDEILRKAVQRFKGKNWKKIAECFKDRTDVQCLHRWQKVLNPELVKGPWSKEEDEIIIDLVNRFGPKKWSTIAQHLPGRIGKQCRERWHNHLNPTINKEAWTQEEELALIRAHQVYGNRWAELAKLLPGRTDNAIKNHWNSSVKKKLESYLASGLLTQLQTVPPVVGNSNQPIASTSSMLQRNGDDNCPRGIDGEEVSQCSQESANAGHLSSARETSSVVLQTGDEYRPNEEHSQASCSEPYYVSLDEVTASLPDMTGHEICNSQFIEQKYSLNPMNSINGDSRLDLTDLTNISSLDYVQDSSQLQNDCIAPSESHDMVNVPFQTSVGLSVTSLESIKAEQMLMSDEECCRILFSEAINDECFSSGDYNKGVNMIDLTGCSSFLGQSSLPSVPSGVSSTGDRYQHVYTTEVNQLVGSEDQQFVSRTQDNIIYANDLSSSPCIQRIDSAEMQEPSDVVQDNSKLVPVNSFGCGSDVEQTSYPTDEKSNVHTEQEETGALCYEPPRFPASLDIPFLSCDLVQSGGDMQQEFSPLGIRQFMMSSMNCLTPFRLWDSPSHGSSPDALLKSAAKTFTSTPSILKKRNRELLSPLSDKRIDKKLEIEMTSTLIKNFSRLDVMFDDNETQGGDSLPPSSVHKGDSGASVEDNKENCGQAVRVEKNKSAILDDEKSEKDLGDSNSQDEIKQQQPLDADSEIKNDVSAAAETVQQPSGILVEHDMNDLLLYSPGQVKLKSERVLTLSARTKKGSGSRINSPSVWIKERERLSVAVTCVQSISSSGPGDNSGDHTAKDGDLETCSIFGGTPFRKSIESPSAWKSPWPFSTFLSSPRIDTEITIEDFGYFLSPGDRSYDAIGLMKQISEQTAAQYASAHEILGNETPKALPKDASGIDRDGDQENIDPQNQHRNHSQLASSALVERRILDFSECGTPVKGENSKTSAMSFSSPSSYLLKGFR 994
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01439 994 Gene3D - 142 203 - -
Cca03g01439 994 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 140 190 IPR017930 -
Cca03g01439 994 MobiDBLite consensus disorder prediction 692 720 - -
Cca03g01439 994 PANTHER MYB PROTEIN-RELATED 5 992 - -
Cca03g01439 994 MobiDBLite consensus disorder prediction 966 994 - -
Cca03g01439 994 MobiDBLite consensus disorder prediction 924 941 - -
Cca03g01439 994 MobiDBLite consensus disorder prediction 238 261 - -
Cca03g01439 994 Gene3D - 89 140 - -
Cca03g01439 994 MobiDBLite consensus disorder prediction 970 988 - -
Cca03g01439 994 CDD SANT 143 183 IPR001005 -
Cca03g01439 994 PANTHER TRANSCRIPTION REPRESSOR MYB5 5 992 - -
Cca03g01439 994 SUPERFAMILY Homeodomain-like 86 182 IPR009057 -
Cca03g01439 994 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 84 139 IPR017930 -
Cca03g01439 994 Gene3D - 36 88 - -
Cca03g01439 994 CDD SANT 40 83 IPR001005 -
Cca03g01439 994 MobiDBLite consensus disorder prediction 915 951 - -
Cca03g01439 994 Pfam Myb-like DNA-binding domain 141 183 IPR001005 -
Cca03g01439 994 Pfam Myb-like DNA-binding domain 37 83 IPR001005 -
Cca03g01439 994 Pfam Myb-like DNA-binding domain 89 135 IPR001005 -
Cca03g01439 994 ProSiteProfiles Myb-like domain profile. 84 135 IPR001005 -
Cca03g01439 994 SUPERFAMILY Homeodomain-like 33 89 IPR009057 -
Cca03g01439 994 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 83 IPR017930 -
Cca03g01439 994 ProSiteProfiles Myb-like domain profile. 136 186 IPR001005 -
Cca03g01439 994 MobiDBLite consensus disorder prediction 240 261 - -
Cca03g01439 994 SMART sant 88 137 IPR001005 -
Cca03g01439 994 SMART sant 36 85 IPR001005 -
Cca03g01439 994 SMART sant 140 188 IPR001005 -
Cca03g01439 994 CDD SANT 91 135 IPR001005 -
Cca03g01439 994 ProSiteProfiles Myb-like domain profile. 32 83 IPR001005 -
Cca03g01439 994 MobiDBLite consensus disorder prediction 661 733 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01439 Cca-Chr3 32799836 32806778 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01439 21 994 MYB Transcription Factor Family AT4G32730 44.520 0.0 731
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca03g01439 Myb_DNA-binding 2.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01439 - K09420 gmx:100811335 1665.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01439 03 32799836 32806778 Cca03g01439 03 32799836 32806778 ECH
Cca05g00675 05 17141501 17152223 Cca03g01439 03 32799836 32806778 PCT