Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01431 ATGGAACAGAGCGAAACGACGTTTGATTTAGCTCCGCGGAAATTGGCCAGGCAATTGGATTTCACCGCCGCTTGCGGTGATCCGTCGCACCTGAAACTTccgccgccgacaccgctgcctcagtctccgtgtcagacgcttcagccgccgccgccgccgcATTCTCCGTTGCAATTGCAATTGGATTTGCATCCGCCAGGGCAACGGTCGTGGTTATATTCACGGCAGAGGACACCTGAGTCTCCGGTAATGCCGCAATTGCAAGCACCGCGGCCGAAGCTAGTTTCGCCGCTTCGTCGAATTCCGCACCCGGTGCAGAAGCTTCCGGTGAAGGTGTTGCAAGCGGTGAAGCTAGAGTCTCCTAGATCACAACCTCGATGTTATGTGGAATTAAAGGACACCACTCCAAAGAAACAGAAACAATGTAACTGCAAAAATTCTAGGTGCCTCAAATTGTACTGTGAGTGCTTTGCAGCTGGGATCTATTGTGATGGCTGCAACTGTGTAAACTGTCACAATAATGTGGATAATGAGGCTGCCAGACAGGAGGCAGTTGGGATAACATTGGAACGTAATCCAAATGCTTTCAGACCAAAAATTGCTAGCAGTCCGCAAGAACCACGAGATTTCAAGGAATGTGAAATTCAAGTAATAGGAAAGCACAATAAAGGATGTCACTGCAAGAAATCAGGTTGCCTTAAGAAGTATTGTGAGTGCTTCCAAGCCAATATCCTCTGCTCTGAAAATTGTAAATGCATGGACTGCAAGAATTTTGAAGGAAGTGATGAAAGAAGAGCAATTTTGCACAAAGAGTATAATCTAGTTCACATCAAACAGGCATCTAATGCTGCCAATACCGGAGTTGTTGGATCATCTGGCTATGGAACCCGTTTAACACCCAAGAAGAGAAAAATTCAGGAAATGTTTCCTGGAAAGTCGGCCATGGATCAAACTGTTAACATGATTGCTCAATACCAACAGGAAATTGATCATATGGCTTCATCACCTTCATCTCTGTCAGATTCCTTTGTTTCTGACCCTGCCAACACAAGATTTTCAGGGTCTTCAAGATCTACGTACCGGTCCGTATTGGCAGATGTCCTCCAGTCACAGAATGTGAAGAATCTCTGTTCACTTTTTGTTGTTCTCTCACGTGTAGCTGCAAATCCAAATAAAGAAATGAGAGTTGACCAGCAAACAAAATCTGGGAACGTTGAATCTTCTGTTGCTTTATCAGCTAAATCGCTTCAAGAAACTAGAGATGTCAACCGGCCTGTTTCTGATGATGGCATGAATAAAGATGAAGTTGATATTGCCAATTGTAATCGGCCATTATCACCGGATACAGCGGCATTGATGTGTGATGAAGAAGATGCTATGCTTTTTGGAAATAATTCTGCAAATGGAGTTGCATGCAACAACACTTATCAAAACATGATTCAAAAGTCATTTAATTCTGATGGATGCACTGATGTTTACGGAGAGCAGGAAAGGCTTATATTGACCAAGTTCTTGGATGTTCTTCGCGGACTCGTAACTCATGGTAGCATAAAAGGAACACTAATTCAGCTGACCATGTAG 1581 0.4156 MEQSETTFDLAPRKLARQLDFTAACGDPSHLKLPPPTPLPQSPCQTLQPPPPPHSPLQLQLDLHPPGQRSWLYSRQRTPESPVMPQLQAPRPKLVSPLRRIPHPVQKLPVKVLQAVKLESPRSQPRCYVELKDTTPKKQKQCNCKNSRCLKLYCECFAAGIYCDGCNCVNCHNNVDNEAARQEAVGITLERNPNAFRPKIASSPQEPRDFKECEIQVIGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSDERRAILHKEYNLVHIKQASNAANTGVVGSSGYGTRLTPKKRKIQEMFPGKSAMDQTVNMIAQYQQEIDHMASSPSSLSDSFVSDPANTRFSGSSRSTYRSVLADVLQSQNVKNLCSLFVVLSRVAANPNKEMRVDQQTKSGNVESSVALSAKSLQETRDVNRPVSDDGMNKDEVDIANCNRPLSPDTAALMCDEEDAMLFGNNSANGVACNNTYQNMIQKSFNSDGCTDVYGEQERLILTKFLDVLRGLVTHGSIKGTLIQLTM 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01431 526 MobiDBLite consensus disorder prediction 31 57 - -
Cca03g01431 526 PANTHER TESMIN/TSO1-RELATED 1 521 IPR028307 -
Cca03g01431 526 MobiDBLite consensus disorder prediction 25 57 - -
Cca03g01431 526 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 139 174 IPR005172 -
Cca03g01431 526 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 223 257 IPR005172 -
Cca03g01431 526 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 5 ISOFORM X1 1 521 - -
Cca03g01431 526 ProSiteProfiles CRC domain profile. 138 260 IPR005172 -
Cca03g01431 526 SMART CXC_2 220 261 IPR033467 -
Cca03g01431 526 SMART CXC_2 137 177 IPR033467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01431 Cca-Chr3 32709399 32714184 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01431 13 518 CPP Transcription Factor Family AT4G29000 43.939 2.85e-121 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Cca03g01431 TCR 2.7e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01431 - K21776 gmx:100811459 790.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01431 03 32709399 32714184 Cca03g01431 03 32709399 32714184 ECH