Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01417 ATGGAGAGGGTTGTCGGTGGCAAGTTTAAGATTGGTCGGAAAATCGGAAGCGGCTCGTTCGGTGAAATTTATATTGCCTCAAATATGGACACCTCTGAGATTGTTGCCGTCAAGATGGAGAGCAAGAAGACCAAACATCCACAACTATTGTATGAAGCAAAGTTATATAGTATTCTTCAAGGAGAAAGTGGTATTCCAAGTATGAAGTGGTGTGGTACTGATGGAGACAATAATGTTCTAGTAATTGATCTTTTGGGACGGAGTCTTGAAGACTTTTTTGTCTACTGTGGGCGGAAGTTTTCATTAAAAACAGTTTTGATGTTGGCTGATCAGATGCTGACAAGAGTAGAGTACTTGCATTCCAAGGGATTTTTGCATAGAGATATCAAACCAGATAACTTCCTTATGGGTCTTGGGAGGAGATCAAGTCAGGTTTATGCTATTGATTTCGGACTAGCAAAAAGATATAGGGACCCTAACACAAACAAGCATATTCCTTACAGAGAGAATAAAAGCTTAACAGGAACTGCAAGATATGCGAGTTGCAACACTCACATGGGCATTGAGCAAAGTCGTCGTGATGATTTGGAGTCTCTAGGCTTTGTTCTTATGTATTTTTTAAGAGGAAGCCTTCCTTGGCAGGGTCTGAAAGCTGCCACCAAAAAGGAAAAATATGACAATATTTGTGAGAAGAAATTATCGACTCCCATTGAGATGCTTTGTAAGTCGTATCCTGTGGAGTTCGCTTCCTACTTTCATTATTGCCGATCTTTGACATTCGATCAACAACCAGATTATGGATTCTTGAGGAACTTGTTTCGTGATTTGTTCAAAAGAGAAGGATATGATTCCGATTATATATTTGACTGGACCATCCTAAAATATCAGCAGGCACAACAGTCAAGGAAACAAAATCAATCATCTCCTTCAGCTGCGGTGCCTAGCAGTCTAGAACCAGTAGTTGTGGAAAAGCATAAAGGAGTCAAGGATTCAGCTCATGTTACTGTAACAAAAATGTTAGCCAATCTTGAATGTCCAAGTGCACGTGTGCAAATTAAGCCATCTAATGTCCGGAATCTGAATGCCAAGAATCAGACCGAGAAACATGGTGTGAACAATAGTCCATCTACTTCCTCTACCATGCTCAAATCATCTACAGAAAATGTCTCAAAACCAGAAAGGCACATAGGAACCTCAAACTTTAGTCGTGTATTTGGGAGTAATTCCCGTGTTTCAAGCAGCTGGATTCCTTCACTGCGCCGAATTTCTTCATCCAAATAG 1281 0.4036 MERVVGGKFKIGRKIGSGSFGEIYIASNMDTSEIVAVKMESKKTKHPQLLYEAKLYSILQGESGIPSMKWCGTDGDNNVLVIDLLGRSLEDFFVYCGRKFSLKTVLMLADQMLTRVEYLHSKGFLHRDIKPDNFLMGLGRRSSQVYAIDFGLAKRYRDPNTNKHIPYRENKSLTGTARYASCNTHMGIEQSRRDDLESLGFVLMYFLRGSLPWQGLKAATKKEKYDNICEKKLSTPIEMLCKSYPVEFASYFHYCRSLTFDQQPDYGFLRNLFRDLFKREGYDSDYIFDWTILKYQQAQQSRKQNQSSPSAAVPSSLEPVVVEKHKGVKDSAHVTVTKMLANLECPSARVQIKPSNVRNLNAKNQTEKHGVNNSPSTSSTMLKSSTENVSKPERHIGTSNFSRVFGSNSRVSSSWIPSLRRISSSK 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01417 426 ProSiteProfiles Protein kinase domain profile. 9 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g01417 426 PANTHER CASEIN KINASE I-LIKE PROTEIN 1 409 - -
Cca03g01417 426 SMART serkin_6 9 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g01417 426 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
Cca03g01417 426 Gene3D Transferase(Phosphotransferase) domain 1 1 339 - -
Cca03g01417 426 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Cca03g01417 426 Pfam Protein kinase domain 10 226 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g01417 426 MobiDBLite consensus disorder prediction 354 426 - -
Cca03g01417 426 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Cca03g01417 426 PANTHER CASEIN KINASE-RELATED 1 409 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01417 Cca-Chr3 32515374 32522958 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01417 4 236 AGC Kinase Gene Family AT3G08720 28.151 1.95e-16 79.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Cca03g01417 Pkinase 4.1e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01417 K08960 K08959 gmx:100792736 776.933