Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01413 ATGGCCATGGCCAAAATCGCTCTTGGAAGCAGCCGAGAGGCCACTCAGCCAGATTGCATTCAGGCCCTCGTCGTTGAATTCATCGCCACCTTCCTCTTCGTATTTGTCGGCGTCGGTTCTTCCATGCTCGTTGATAAGCTAGGAGGGGATCCACTAGTCGCCTTGTTTGCTGTGGCCCTCGCCCATGCACTTGTCGTCGCCGTAATGATCTCCGCCGCCCACATTTCCGGCGGCCACCTCAACCCCTCCGTCACCCTCGGCCTCCTCGTCGGCGGTCACATCACCGTCTTCCGTTCCATCCTCTATTGGATCGATCAATTGCTCGCATCTGCCGCAGCTTCTTATCTACTTTACTACCTCTCCGGAGGACAGGCGATTCCGGTTCATACGTTGGCGAGTGGCGTGGGGTACGGTCAAGGGGTAGTTTGGGAGATTGTGTTGACGTTTTCTTTGTTGTTCACTGTCTATGCCACCATGGTGGATCCCAAGAAGGGAGCGCTTGCTGGGCTTGGCCCAACCCTCGTTGGGTTTGTCGTGGGGGCCAACATCCTTGCTGGTGGGGCTTACTCCGCTGCTTCTATGAACCCGGCAAGATCTTTTGGGCCTGCCTTGGTTGCTGGCAACTGGACCGATCACTGGGTTTACTGGGTTGGACCTCTCATCGGGGGTGCCCTTGCTGGTTTCATTTACGAGACTTTCTTCATTGATCGATCTCACGTTCCACTTCCTCGAGATGAAGAAAGCTAA 747 0.5542 MAMAKIALGSSREATQPDCIQALVVEFIATFLFVFVGVGSSMLVDKLGGDPLVALFAVALAHALVVAVMISAAHISGGHLNPSVTLGLLVGGHITVFRSILYWIDQLLASAAASYLLYYLSGGQAIPVHTLASGVGYGQGVVWEIVLTFSLLFTVYATMVDPKKGALAGLGPTLVGFVVGANILAGGAYSAASMNPARSFGPALVAGNWTDHWVYWVGPLIGGALAGFIYETFFIDRSHVPLPRDEES 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01413 248 CDD MIP 21 233 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca03g01413 248 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca03g01413 248 PRINTS Major intrinsic protein family signature 61 85 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca03g01413 248 PRINTS Major intrinsic protein family signature 98 117 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca03g01413 248 PRINTS Major intrinsic protein family signature 143 161 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca03g01413 248 PRINTS Major intrinsic protein family signature 176 198 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca03g01413 248 PRINTS Major intrinsic protein family signature 213 233 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca03g01413 248 PANTHER AQUAPORIN-8 4 247 IPR034294 -
Cca03g01413 248 PANTHER AQUAPORIN TIP4-1 4 247 - -
Cca03g01413 248 ProSitePatterns MIP family signature. 79 87 IPR022357 -
Cca03g01413 248 SUPERFAMILY Aquaporin-like 13 243 IPR023271 -
Cca03g01413 248 Pfam Major intrinsic protein 15 230 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca03g01413 248 Gene3D Glycerol uptake facilitator protein. 3 244 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01413 Cca-Chr3 32489374 32490759 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01413 3 247 Major Intrinsic Protein MIP AT2G25810 76.327 7.63e-128 360
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01413 K09873 - gmx:100811447 442.965
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01413 03 32489374 32490759 Cca03g01413 03 32489374 32490759 ECH