Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01406 ATGGGGGTTTcagcggagaaggcagagacagagaagtcaaagggaggagaggcagagagcaAGAAGATAAAACGCATTCGTGATCGTGACTCCAGCAGGCACCCGGAGTACCGGGGCGTGCGGATGCGGAACTGGGGAAAATGGGTGTCCGAAATCCGCGAGCCTCGCAAGAAGTCGCGGATATGGCTCCCCACCCTCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGCCTCGCAAGAAGTCGCGGATATGGCTCGGCACATTCCCCACGCCGGAAATGGCCGCCAGGGCGCACGACGTGGCGGCGCTCAGCATCAAAGGCTCCGCCGCCATTCTCAACTTCCCCCACCTGGCCGCCTCCCTCCCCCGGCCCGCCTCCCTGGCCCCCCGCGACGTCCAAGCGGCGGCGGCCAAGGCGGCGCACATCGACCCCTCCTCGCTCTCCTCGGAGGAGCTGACACAGATAGTGGAGCTTCCCTCTCTGGAGGGGTCTCTGGATTTGGAGAAGGAGTTCGTGTTGGTTGACTCTCTGGACTCGTGGATGTACCAGAATCAGGGTCCTATGGGTTTCGACACTGAACAAGGTTTGGAGGGTTTCACGTGGAATTACTAG 819 0.4078 MGVSAEKAETEKSKGGEAESKKIKRIRDRDSSRHPEYRGVRMRNWGKWVSEIREPRKKSRIWLPTLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPRKKSRIWLGTFPTPEMAARAHDVAALSIKGSAAILNFPHLAASLPRPASLAPRDVQAAAAKAAHIDPSSLSSEELTQIVELPSLEGSLDLEKEFVLVDSLDSWMYQNQGPMGFDTEQGLEGFTWNY 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01406 272 Coils Coil 145 145 - -
Cca03g01406 272 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 145 252 - -
Cca03g01406 272 SUPERFAMILY DNA-binding domain 146 185 IPR016177 GO:0003677
Cca03g01406 272 MobiDBLite consensus disorder prediction 1 35 - -
Cca03g01406 272 Pfam AP2 domain 147 176 IPR001471 GO:0003700|GO:0006355
Cca03g01406 272 PRINTS Ethylene responsive element binding protein signature 37 48 IPR001471 GO:0003700|GO:0006355
Cca03g01406 272 PRINTS Ethylene responsive element binding protein signature 150 166 IPR001471 GO:0003700|GO:0006355
Cca03g01406 272 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 7 67 - -
Cca03g01406 272 SMART rav1_2 36 190 IPR001471 GO:0003700|GO:0006355
Cca03g01406 272 CDD AP2 145 186 IPR001471 GO:0003700|GO:0006355
Cca03g01406 272 ProSiteProfiles AP2/ERF domain profile. 36 184 IPR001471 GO:0003700|GO:0006355
Cca03g01406 272 MobiDBLite consensus disorder prediction 7 35 - -
Cca03g01406 272 Gene3D AP2/ERF domain 140 185 IPR036955 GO:0003700|GO:0006355
Cca03g01406 272 Gene3D AP2/ERF domain 36 68 IPR036955 GO:0003700|GO:0006355
Cca03g01406 272 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF035 7 67 - -
Cca03g01406 272 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF035 145 252 - -
Cca03g01406 272 SUPERFAMILY DNA-binding domain 36 63 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01406 Cca-Chr3 32424204 32425022 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01406 10 67 AP2-EREBP Transcription Factor Family AT5G11590 72.414 1.48e-19 83.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca03g01406 AP2 5.5e-06 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01406 K09286 - gmx:100813069 203.371
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01406 03 32424204 32425022 Cca03g01406 03 32424204 32425022 ECH