Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cca03g01406 | ATGGGGGTTTcagcggagaaggcagagacagagaagtcaaagggaggagaggcagagagcaAGAAGATAAAACGCATTCGTGATCGTGACTCCAGCAGGCACCCGGAGTACCGGGGCGTGCGGATGCGGAACTGGGGAAAATGGGTGTCCGAAATCCGCGAGCCTCGCAAGAAGTCGCGGATATGGCTCCCCACCCTCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGCCTCGCAAGAAGTCGCGGATATGGCTCGGCACATTCCCCACGCCGGAAATGGCCGCCAGGGCGCACGACGTGGCGGCGCTCAGCATCAAAGGCTCCGCCGCCATTCTCAACTTCCCCCACCTGGCCGCCTCCCTCCCCCGGCCCGCCTCCCTGGCCCCCCGCGACGTCCAAGCGGCGGCGGCCAAGGCGGCGCACATCGACCCCTCCTCGCTCTCCTCGGAGGAGCTGACACAGATAGTGGAGCTTCCCTCTCTGGAGGGGTCTCTGGATTTGGAGAAGGAGTTCGTGTTGGTTGACTCTCTGGACTCGTGGATGTACCAGAATCAGGGTCCTATGGGTTTCGACACTGAACAAGGTTTGGAGGGTTTCACGTGGAATTACTAG | 819 | 0.4078 | MGVSAEKAETEKSKGGEAESKKIKRIRDRDSSRHPEYRGVRMRNWGKWVSEIREPRKKSRIWLPTLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPRKKSRIWLGTFPTPEMAARAHDVAALSIKGSAAILNFPHLAASLPRPASLAPRDVQAAAAKAAHIDPSSLSSEELTQIVELPSLEGSLDLEKEFVLVDSLDSWMYQNQGPMGFDTEQGLEGFTWNY | 272 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cca03g01406 | 272 | Coils | Coil | 145 | 145 | - | - | |
Cca03g01406 | 272 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 145 | 252 | - | - | |
Cca03g01406 | 272 | SUPERFAMILY | DNA-binding domain | 146 | 185 | IPR016177 | GO:0003677 | |
Cca03g01406 | 272 | MobiDBLite | consensus disorder prediction | 1 | 35 | - | - | |
Cca03g01406 | 272 | Pfam | AP2 domain | 147 | 176 | IPR001471 | GO:0003700|GO:0006355 | |
Cca03g01406 | 272 | PRINTS | Ethylene responsive element binding protein signature | 37 | 48 | IPR001471 | GO:0003700|GO:0006355 | |
Cca03g01406 | 272 | PRINTS | Ethylene responsive element binding protein signature | 150 | 166 | IPR001471 | GO:0003700|GO:0006355 | |
Cca03g01406 | 272 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 7 | 67 | - | - | |
Cca03g01406 | 272 | SMART | rav1_2 | 36 | 190 | IPR001471 | GO:0003700|GO:0006355 | |
Cca03g01406 | 272 | CDD | AP2 | 145 | 186 | IPR001471 | GO:0003700|GO:0006355 | |
Cca03g01406 | 272 | ProSiteProfiles | AP2/ERF domain profile. | 36 | 184 | IPR001471 | GO:0003700|GO:0006355 | |
Cca03g01406 | 272 | MobiDBLite | consensus disorder prediction | 7 | 35 | - | - | |
Cca03g01406 | 272 | Gene3D | AP2/ERF domain | 140 | 185 | IPR036955 | GO:0003700|GO:0006355 | |
Cca03g01406 | 272 | Gene3D | AP2/ERF domain | 36 | 68 | IPR036955 | GO:0003700|GO:0006355 | |
Cca03g01406 | 272 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF035 | 7 | 67 | - | - | |
Cca03g01406 | 272 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF035 | 145 | 252 | - | - | |
Cca03g01406 | 272 | SUPERFAMILY | DNA-binding domain | 36 | 63 | IPR016177 | GO:0003677 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Cca03g01406 | Cca-Chr3 | 32424204 | 32425022 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Cca03g01406 | 10 | 67 | AP2-EREBP Transcription Factor Family | AT5G11590 | 72.414 | 1.48e-19 | 83.2 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | AP2 or ERF-ERF | Cca03g01406 | AP2 | 5.5e-06 | CL0081 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cca03g01406 | K09286 | - | gmx:100813069 | 203.371 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Cca03g01406 | 03 | 32424204 | 32425022 | Cca03g01406 | 03 | 32424204 | 32425022 | ECH |