Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01398 ATGGAAGCACATGAGTTTTTTCACAACTCCTTCTCCGACAACCCCTCCGCCGCCGACCACTTCATCGTCGAAGACTTCTTCGACTTCTCCAACGACGAAGACGCCGCCACCACCCTCACCGACTCCCTCCCCGCCCACGCCGTAACCCCCGCCGACACCACCACCAACTGCAATTTCCCAGCCGCCCAAGACCATTTCTCCGGTGACCTCTCCGTGCCGCAGTACGATGATCTTGCGGAATTGGAGTGGCTGTCGAAATTCGCGGAGGAATCGTTCTCGAGCGAGGATTTGCAGAAGCTGCAGCTGATATCGGGTGTGAGAGTGGAAAGCGACGGGGCCTCCTCGGAAAGGCGTGAGGCCAGCCCAGTGTTGGGCCCGGCGCAAGGGTCGGTTCCGGGGAAGGCCCGGAGCAAGCGGTCTCGAGGGGATTGGGCCTCTCGCCTGGTTGCGCCGCggaggagggagggcgccgagggaggggcggagggGCGGAAGTGCCTGCATTGCGCCACGGACAAGACCCCGCAGTGGCGGACGGGGCCCATGGGCCCCAAGACGCTCTGCAACGCCTGCGGCGTCAGGTACAAATCGGGGCGGCTTGTCCCCGAGTACAGGCCCGCGGCCAGCCCAACGTTCGTGCTGACGAAGCACTCGAACTCCCATTTTACACGCATACTTCTCCATTTACTTTTTACACAACTAAATAAAAATTcagcagcagcagttgctccatctgcagcatcagcagAACGTCATGTTTGA 762 0.5459 MEAHEFFHNSFSDNPSAADHFIVEDFFDFSNDEDAATTLTDSLPAHAVTPADTTTNCNFPAAQDHFSGDLSVPQYDDLAELEWLSKFAEESFSSEDLQKLQLISGVRVESDGASSERREASPVLGPAQGSVPGKARSKRSRGDWASRLVAPRRREGAEGGAEGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHFTRILLHLLFTQLNKNSAAAVAPSAASAERHV 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01398 253 ProSiteProfiles GATA-type zinc finger domain profile. 160 196 IPR000679 GO:0006355|GO:0043565
Cca03g01398 253 PANTHER GATA TRANSCRIPTION FACTOR 12 149 - -
Cca03g01398 253 MobiDBLite consensus disorder prediction 136 162 - -
Cca03g01398 253 PANTHER GATA TRANSCRIPTION FACTOR 12 149 - -
Cca03g01398 253 PANTHER GATA TRANSCRIPTION FACTOR 151 222 - -
Cca03g01398 253 SMART GATA_3 160 210 IPR000679 GO:0006355|GO:0043565
Cca03g01398 253 CDD ZnF_GATA 165 212 IPR000679 GO:0006355|GO:0043565
Cca03g01398 253 Pfam GATA zinc finger 166 199 IPR000679 GO:0006355|GO:0043565
Cca03g01398 253 MobiDBLite consensus disorder prediction 108 162 - -
Cca03g01398 253 Gene3D - 159 210 IPR013088 GO:0006355|GO:0008270
Cca03g01398 253 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 162 221 - -
Cca03g01398 253 PANTHER GATA TRANSCRIPTION FACTOR 151 222 - -
Cca03g01398 253 ProSitePatterns GATA-type zinc finger domain. 166 191 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01398 Cca-Chr3 32296650 32297911 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01398 2 221 C2C2-Gata Transcription Factor Family AT5G25830 47.203 1.29e-63 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Cca03g01398 GATA 2e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01398 - - ccaj:109800206 475.707
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01398 03 32296650 32297911 Cca03g01398 03 32296650 32297911 ECH