Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01397 ATGATGGCGGTGAGTTCAGCCTGCAAAGATGGGAGCAAGGTGGCAATGGACAACGGCAAGTACGTGAGGTACACACCAGAACAGGTGGAAGCTCTCGAGAGGCTCTACCATGAATGCCCCAAACCAAGCTCCCTCCGCCGCCAACAACTCATCAGAGAGTGTCCCATTCTCTCCAACATCGAGCCCAAGCAGATCAAGGTTTGGTTCCAGAACCGAAGGTGCAGAGAGAAGCAGCGGAAAGAAGCGTCACGGCTGCAAGCTGTGAACAGGAAGCTAACAGCAATGAATAAGTTACTGATGGAGGAAAACGACAGATTGCAGAAGCAGGTGTCACAGCTGGTGTATGAAAACAGCTTTTTCCGCCAACAGACACAGAACGCGACCCTTGCGACGACGGACACGAGCTGTGAGTCGGTGGTAACGAGTGGTCAGCGGAACTTGACACCAAGGGATGCTAGCCCTGCAGGACTTTTGTCCATTGCAGAGGAGACTTTAGCAGAGTTTCTTTCAAAGGCTACTGGAACTGCTGTCGAGTGGGTCCAAATGCCTGGGATGAAGCCTGGTCCGGATTCCATAGGAATCGTTGCTATTTCTCATGGTTGCCCTGGAGTGGCTGCACGTGCCTGCGGCCTTGTGGGTCTAGAACCTGCCAGGGTTGCCGAAATCCTCAAAGATAGGCTCTCATGGTTTCGTGATTGCCGAGCTGTGGATGTTGTAAATGCCATGTCCACTGGAAATGGTGGAACCATTGAGCTGCTTTACATGCAGTTGTATGCGCCAACAACTTTGGCTCCTGGTCGTGACTTCTGGTTGCTGCGCTACACATCTCTTTTGGAGGATGGTAGTCTTGTGGTCTGTGAAAGATCACTCAACAACACTCAGAATGGTCCTGCTATGCCCCCAGTGCAGCATTTTGTTAGAGCTGACATGCTGCCAAGCGGGTATCTCATAAGACCTTGCGAAGGAGGGGGATCCATTATTCATATTGTTGATCATATGGTTCTAGAGCCATGGAGTGTACCTGAAGTTTTGCGCCCACTTTACGAGTCATCAATGCTACTTGCTCAGAGGACAACTATGGCGGCCTTACGTCATTTGAGACAGATTTCTCAAGAAGTTTCTCAGCCAAGTGTCACAGGATGGGGAAGAAGGCCTGCAGCTCTACGTGCGCTGAGTCAGAGATTGAGCAAGGGCTTTAATGAAGCTGTGAATGGATTTGCAGATGATGGCTGGTCCATGTTAGAGAGTGACGGCATTGACGATGTCACCCTTCTAGTGAATTCCTCACCTAGCAAGATGATGGGAGTGAATCTTGGCTATAACAACAATGGATTTCCTTCTGTGAGCAGTTCTGTGCTATGTGCCAAAGCATCCATGTTGCTACAGAATGTTCCTCCAGCAATTCTTCTTAGATTCTTGCGGGAGCACCGGTCCGAATGGGCAGATAGCAGTATTGATGCTTACTCAGCTGCTGCCATCAAAGCTGGTCCCTGTAGCCTGCCAGGGGCCAGACCAGGGGGTTTTGGGGGTCAGGTTATTCTTCCACTAGCTCATACAATTGAGCATGAAGAGTTTATGGAGGTTATTAAGTTGGAAAACATGGGCTATTATAGGGACGACATGACTATACCTGGTGATGTTTTCCTCTTGCAACTTTGTAGTGGAGTGGACGAGCATGCAGTTGGCACCAGTGCAGAACTTGTTTTTGCTCCAATTGATGCATCTTTCTCCGATGATGCACCCATTTTACCTTCTGGTTTTCGCATCATACCTCTAGATTCTAGCACGGGTGCTGCTAGTCCAAACCGTACACTTGATCTGGCTTCTGCACTTGAGGTTGGAACAACAGCAAACAAAGCAGCTGGTGACAACTCAGGTCATTCTGGGAGCACAAAGTCTGTGATGACAATAGCATTCCAGTTTGCATTTGACGTCCACCTTCAAGAGAACATAGCAACTATGGCCCGCCAATATGTTCGTAGTATCATTGCATCTGTTCAGAGGGTTTCATTAGCACTTTCTCCTTCACGTTTTGGCTCTCACAATGCTTTTCACTTACCTCCTGGCACTCCCGAGGCACAAACACTTGCTAGGTGGATCTGTAACAGCTATAGGTTCTATCTAGGGGTAGAACTTCTAAAATGTGAAGGCAGCGAGTCCATCCTCAAATCCCTTTGGCATCACTCAGATGCAGTTTTGTGCTGCTCTTTAAAGGCATTACCCGTTTTCACGTTTGCAAATCAAGCTGGACTTGACATGCTTGAGACAACCTTGGTTGCACTTCAAGACATAACCCTGGAAAAGATTTTTGATGACAATGGAAAGAAAACACTGTGCTCCGAGTTCCCCCAGATAATGCAGCAGGGATTCATGTGTATTCAAGGTGGTATCTGTTTGTCGAGCATGGGGAGGCCAGTGTCGTATGAGAGAGCAGTTGCATGGAAAGTATTAAACGAAGAAGAATCCGCTCATTGTATCTGTTTTATGTTCATTAATTGGTCTTTTGTCTGA 2511 0.4807 MMAVSSACKDGSKVAMDNGKYVRYTPEQVEALERLYHECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENSFFRQQTQNATLATTDTSCESVVTSGQRNLTPRDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCPGVAARACGLVGLEPARVAEILKDRLSWFRDCRAVDVVNAMSTGNGGTIELLYMQLYAPTTLAPGRDFWLLRYTSLLEDGSLVVCERSLNNTQNGPAMPPVQHFVRADMLPSGYLIRPCEGGGSIIHIVDHMVLEPWSVPEVLRPLYESSMLLAQRTTMAALRHLRQISQEVSQPSVTGWGRRPAALRALSQRLSKGFNEAVNGFADDGWSMLESDGIDDVTLLVNSSPSKMMGVNLGYNNNGFPSVSSSVLCAKASMLLQNVPPAILLRFLREHRSEWADSSIDAYSAAAIKAGPCSLPGARPGGFGGQVILPLAHTIEHEEFMEVIKLENMGYYRDDMTIPGDVFLLQLCSGVDEHAVGTSAELVFAPIDASFSDDAPILPSGFRIIPLDSSTGAASPNRTLDLASALEVGTTANKAAGDNSGHSGSTKSVMTIAFQFAFDVHLQENIATMARQYVRSIIASVQRVSLALSPSRFGSHNAFHLPPGTPEAQTLARWICNSYRFYLGVELLKCEGSESILKSLWHHSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDNGKKTLCSEFPQIMQQGFMCIQGGICLSSMGRPVSYERAVAWKVLNEEESAHCICFMFINWSFV 836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01397 836 SUPERFAMILY Bet v1-like 159 370 - -
Cca03g01397 836 ProSiteProfiles 'Homeobox' domain profile. 15 79 IPR001356 GO:0003677
Cca03g01397 836 Coils Coil 75 116 - -
Cca03g01397 836 Gene3D - 194 375 IPR023393 -
Cca03g01397 836 PANTHER CLASS III HD-ZIP PROTEIN CNA1 5 836 - -
Cca03g01397 836 SMART START_1 159 369 IPR002913 GO:0008289
Cca03g01397 836 Pfam START domain 160 368 IPR002913 GO:0008289
Cca03g01397 836 SUPERFAMILY Homeodomain-like 19 83 IPR009057 -
Cca03g01397 836 ProSiteProfiles START domain profile. 150 378 IPR002913 GO:0008289
Cca03g01397 836 Pfam MEKHLA domain 695 835 IPR013978 -
Cca03g01397 836 CDD START_ArGLABRA2_like 154 369 - -
Cca03g01397 836 CDD homeodomain 20 80 IPR001356 GO:0003677
Cca03g01397 836 SMART HOX_1 17 83 IPR001356 GO:0003677
Cca03g01397 836 Gene3D - 11 86 - -
Cca03g01397 836 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 5 836 IPR044830 GO:0003700
Cca03g01397 836 CDD bZIP 72 111 - -
Cca03g01397 836 Pfam Homeodomain 20 78 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01397 Cca-Chr3 32242090 32248347 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01397 16 836 Homeobox Transcription Factor Family AT4G32880 80.482 0.0 1388
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Cca03g01397 START 2.7e-52 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01397 K09338 - gmx:100815727 1632.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01397 03 32242090 32248347 Cca03g01397 03 32242090 32248347 ECH