Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01395 ATGGCCAAAGGATCTTCAAAGTTTTCAAAGAAAAAATCCATGACATTTATATGCCTCTTCATGTTCATGCTCAACTTCCACTTATCCCACGGAGAGCAAGAGGTTGAGCTTCTGTTATCCTTCAAAGCTTCACTCCACGACCCTCTTCATTTTCTCTCCAACTGGGACACTTCCTCTGCCACCATCTGCAAGTGGCATGGCATAACCTGCGACAACAACGTTAACTCTTCCCATGTTAACGCTGTTGTGATCTCAGGAAAAAACATAACCGGCGAGGTTTCCTCCTCCATTTTTCAACTCCCGTACGTTACAAACCTCGACCTttccaataatcagtttgttggtgaaatcacttttacctactctctcaattctgtgtctccactccgttaccttaacctcagcaacaacaacctcacgggttctttgcctcgacccttgtTTTCCGTGCTTTTCTCAAACCTCGAAACTCTTGATCTCTCGAACAACATGTTTTCGGGGAACATACCTGACCAAATTGGATTGCTTTCAAGCCTAAAGTATCTTGATCTCGGAGGAAACGTTTTGGTGGGAAAGATTCCCAGTTCCATCACCAACATGACAACTTTAGAGTACCTCACGTTGGCTTCAAACCAGTTAGTGGATAAGATACCTGAAGATATCGGCGTAATGAAGAGGTTGAAGTGGATTTACTTGGGATACAACAATCTTTCAGGTGAGATACCAAGTAGCATTGGTGAGTTATTATCTTTGAACCACCTCGATCTTGTTTACAACAATCTCACTGGACCTATTCCTCAGTCTCTTGGACACCTCATCCAGCTTCAATATCTCTTTCTCTACCAAAACAAACTAAGTGGTCCAATTCCCGGAGCCATTTTCAATCTGAAAAAGCTCATTTCACTTGATCTAAGTGATAACGGTCTTTCTGGTGAGATTTCTGAGCGCGTGGTTCAGCTCCAGAGACTGGAGATTCTCCATCTTTTCTCAAACAAGTTCACTGGGAAGATTCCAAAGGCTATTGCATCTTTGCCTCGGCTTCAGGTTCTTCAGCTATGGTCAAACGCATTTACAGGTGAGATTCCTGAGGAGCTAGGGAAGCATAGCAACCTCACTGTTTTGGACCTCTCCACCAACAACCTCACAGGGAGGATTCCAGATAACATATGCGACTCAGGTAGTCTTTTCAAGCTTATCCTCTTCTCAAACTCTTTCGAAGGAGAAATCCCGAAGAGCTTAACCTCTTGCAGAAGCCTTCGCCGCGTGAGACTCCAAAACAACAAGCTCTCCGGAAAACTACCTCCGGAGTTGACCACACTGCCTCAGGTTTACTTCTTGGAAATCTCTGGCAACCAACTTTCCGGAAGGATCGATGACAGAAAATGGAACATGCCGTCGCTTCAAATGCTTAGTTTGGCTAACAACAACTTCTCAGGAGAAATCCCAAACTCATTCGGGACTCAGAAGCTAGAGGACTTGGACTTATCACACAATCGATTCTCAGGTTCTATTCCTGTTGGTTTTGAAACGTTATCAGAGTTGGTAGAATTGAAGCTCAGCTATAACAACCTCTTCGGTGAAATCCCTGAAGAACTATGCGCGTGCAAGAAGCTTGTGGCCTTAgacttgagtcacaaccacctcagtggcgaaattccggtgaaactctccgacatgccggttctgggcctcttagacctggcggaaaaccaattctccggcgacattccgcAGAATTTGGGAAGCATGGAGTCTCTTGTTCAGGTAAACATATCACACAACCATTTTCATGGAAGCTTACCTTCCACCGGGGCTTTCCTCGCCATTAACACGAGTGCAGTCGCCGGCAACAGCCTCTGCGACCGTGACGGCGACGCTTCAAGTGGTTTGCCACCGTGCAAAAGCAACAACCAGAACCCCACTTGGCTTTTCATCATGCTGTGCTTTCTACTAGCCTTGGTTGCGTTCGCGGCGGCTTCTTTTGTCGTGTTTGTCGTTCGTAGGAGGAAGAGCTTCTCcgaggagcgaagagtggagaacgaagacggaacatgggaagtgcAGTTTTTTGACTCCAAGGCCGCGAGGTTGATGAGCATCGAGGATGTTTTGTCGGCGGTTAAAGAAGGAAAAGTGGTTTCCAAAGGAAGAAACTGGGTTTCGTACGAAGGGAAGTGCATGGAGGATGACATGCAGTTCGTGGTGAAGGAAATTAGTGACTTGAATTCGGTTCCGATGAGTATGTGGGAAGAGACAGTGAAAGTTGGGAAGCTTCGACACCCGAATATAGTGAAGCTTATTGGGACGTGTAGGTGCGGGAAGAGAGGGTACTTGGTGTACGAGCACGAAGAGGGGAATAAGTTAAGCCAAATTTTCAACAGTTTGAGTTGGCAACGGCGCCGCGAAGTTGCTATTGGCGTTGCAAAAGCGCTTAAGTTCTTGCATTCTCACGCTTCGTCCATGCTTTTCATTGGAGAGGTGTCACCGGAGATAGTTTGGGTCGACAATAAAGGCGTCCCTCGCGTTAAACTCACCCCTCCCGCGGTGCCATGTTTGGATGTCAAGGGTTTCGTTTCTTCGCCCTACGTTGCTCAAGAGGGAAGAGATGCGACGGAGAAGAGTGAGATATATGGGTTGGGAGTGATGGTGATTGAATTATTGACGGGAAGAAGCGCCATGGACATGGTCGACATAGAAGCTGGAAATGGAAATGGCATGCACAAGAGCATTGTGGAGTGGGCCCGCTATTGCTACTCTGAGTGTCATGTTGACACGTGGATAGATCCTGTGATGAAAGGTGGAGATGCATTGACCTATCAGAACGACATCGTTGAGACAATGAATCTGGCGCTGCACTGTACCGCAACTGATCCCACCGCAAGGCCACGCGCAAGAGACGTACTCAAAGCCCTAGAGACTGTTCACACCAACACAAACACTTTTTGTTGA 2949 0.4232 MAKGSSKFSKKKSMTFICLFMFMLNFHLSHGEQEVELLLSFKASLHDPLHFLSNWDTSSATICKWHGITCDNNVNSSHVNAVVISGKNITGEVSSSIFQLPYVTNLDLSNNQFVGEITFTYSLNSVSPLRYLNLSNNNLTGSLPRPLFSVLFSNLETLDLSNNMFSGNIPDQIGLLSSLKYLDLGGNVLVGKIPSSITNMTTLEYLTLASNQLVDKIPEDIGVMKRLKWIYLGYNNLSGEIPSSIGELLSLNHLDLVYNNLTGPIPQSLGHLIQLQYLFLYQNKLSGPIPGAIFNLKKLISLDLSDNGLSGEISERVVQLQRLEILHLFSNKFTGKIPKAIASLPRLQVLQLWSNAFTGEIPEELGKHSNLTVLDLSTNNLTGRIPDNICDSGSLFKLILFSNSFEGEIPKSLTSCRSLRRVRLQNNKLSGKLPPELTTLPQVYFLEISGNQLSGRIDDRKWNMPSLQMLSLANNNFSGEIPNSFGTQKLEDLDLSHNRFSGSIPVGFETLSELVELKLSYNNLFGEIPEELCACKKLVALDLSHNHLSGEIPVKLSDMPVLGLLDLAENQFSGDIPQNLGSMESLVQVNISHNHFHGSLPSTGAFLAINTSAVAGNSLCDRDGDASSGLPPCKSNNQNPTWLFIMLCFLLALVAFAAASFVVFVVRRRKSFSEERRVENEDGTWEVQFFDSKAARLMSIEDVLSAVKEGKVVSKGRNWVSYEGKCMEDDMQFVVKEISDLNSVPMSMWEETVKVGKLRHPNIVKLIGTCRCGKRGYLVYEHEEGNKLSQIFNSLSWQRRREVAIGVAKALKFLHSHASSMLFIGEVSPEIVWVDNKGVPRVKLTPPAVPCLDVKGFVSSPYVAQEGRDATEKSEIYGLGVMVIELLTGRSAMDMVDIEAGNGNGMHKSIVEWARYCYSECHVDTWIDPVMKGGDALTYQNDIVETMNLALHCTATDPTARPRARDVLKALETVHTNTNTFC 982
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01395 982 SUPERFAMILY L domain-like 317 621 - -
Cca03g01395 982 Pfam Leucine Rich Repeat 129 146 IPR001611 GO:0005515
Cca03g01395 982 PANTHER - 8 975 - -
Cca03g01395 982 SUPERFAMILY RNI-like 84 384 - -
Cca03g01395 982 Gene3D Phosphorylase Kinase; domain 1 670 782 - -
Cca03g01395 982 Pfam Protein kinase domain 715 969 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g01395 982 ProSiteProfiles Protein kinase domain profile. 707 978 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g01395 982 SMART LRR_typ_2 511 535 IPR003591 -
Cca03g01395 982 SMART LRR_typ_2 344 368 IPR003591 -
Cca03g01395 982 SMART LRR_typ_2 464 488 IPR003591 -
Cca03g01395 982 SMART LRR_typ_2 248 272 IPR003591 -
Cca03g01395 982 SMART LRR_typ_2 200 224 IPR003591 -
Cca03g01395 982 SMART LRR_typ_2 559 583 IPR003591 -
Cca03g01395 982 SMART LRR_typ_2 152 176 IPR003591 -
Cca03g01395 982 SMART LRR_typ_2 126 150 IPR003591 -
Cca03g01395 982 SMART LRR_typ_2 296 320 IPR003591 -
Cca03g01395 982 SMART LRR_typ_2 369 392 IPR003591 -
Cca03g01395 982 SMART serkin_6 707 974 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g01395 982 Pfam Leucine rich repeat 489 548 IPR001611 GO:0005515
Cca03g01395 982 Pfam Leucine rich repeat 345 404 IPR001611 GO:0005515
Cca03g01395 982 Pfam Leucine rich repeat 250 309 IPR001611 GO:0005515
Cca03g01395 982 Pfam Leucine rich repeat 153 213 IPR001611 GO:0005515
Cca03g01395 982 SUPERFAMILY Protein kinase-like (PK-like) 708 976 IPR011009 -
Cca03g01395 982 Gene3D Transferase(Phosphotransferase) domain 1 783 981 - -
Cca03g01395 982 Gene3D Ribonuclease Inhibitor 150 240 IPR032675 -
Cca03g01395 982 Gene3D Ribonuclease Inhibitor 241 340 IPR032675 -
Cca03g01395 982 Gene3D Ribonuclease Inhibitor 33 149 IPR032675 -
Cca03g01395 982 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 8 975 - -
Cca03g01395 982 Pfam Leucine rich repeat N-terminal domain 33 71 IPR013210 -
Cca03g01395 982 Gene3D Ribonuclease Inhibitor 346 626 IPR032675 -
Cca03g01395 982 ProSiteProfiles Leucine-rich repeat profile. 154 176 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01395 Cca-Chr3 32222065 32226270 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01395 19 972 Receptor kinase-like Gene Family AT2G25790 51.245 0.0 909
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Singleton Cca03g01395 Pkinase 3.1e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01395 - - gmx:100777118 1661.35