Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01390 ATGGCAGAGGAAAAGTGGGAAGGTAAAGCGGTGGCGGAGCTAGCAGGAACGGGCGCAGAAGAAGCATGGTCGGCGTTAGAGGATTTCTGCAACCTCCAAAAGTGGTTCCCCATCGACACATCTTACCGGCTAGAGGGGGTTCCCGGTCAACCTGGCCTCACCCGCTACTGTGCCTCCAACGTCAAAGGAACCATCATGTGGGCCAAAGAGAAGCTTCTCTCCATCGACCCCCTCCAACGTTGTTTGTCCTATGAAATCGTTGACAACAACCTTGGATTCAAGTCCTATGTTGCTACCCTTCAGGTGCTGCCCATCCATGAGGGTGGATGCAAGATCGAGTGGGGCTTCGTGAGTGATCCTGTTGAAGGCTGGAGCTTCCAAGATTTGAAGGGATATGTTGAATCCACTATTCAGTTCATGGCCAACAAGATTCAGCTTGCTTCTTCTTCTCTTGCTGCTGCTTAA 465 0.5161 MAEEKWEGKAVAELAGTGAEEAWSALEDFCNLQKWFPIDTSYRLEGVPGQPGLTRYCASNVKGTIMWAKEKLLSIDPLQRCLSYEIVDNNLGFKSYVATLQVLPIHEGGCKIEWGFVSDPVEGWSFQDLKGYVESTIQFMANKIQLASSSLAAA 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01390 154 PANTHER - 4 147 - -
Cca03g01390 154 PANTHER POLYKETIDE CYCLASE/DEHYDRASE AND LIPID TRANSPORTER 4 147 - -
Cca03g01390 154 CDD PYR_PYL_RCAR_like 6 145 - -
Cca03g01390 154 SUPERFAMILY Bet v1-like 18 141 - -
Cca03g01390 154 Gene3D - 1 152 IPR023393 -
Cca03g01390 154 Pfam Polyketide cyclase / dehydrase and lipid transport 18 141 IPR019587 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01390 Cca-Chr3 32158497 32159298 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01390 - - gmx:100798368 233.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01390 03 32158497 32159298 Cca03g01390 03 32158497 32159298 ECH
Cca03g01390 03 32158497 32159298 Cca05g00868 05 23530312 23532958 ECH