Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01388 ATGCAATGCACAACGCAAATCCCAATCCGATCACTCAACCACACTCGCCGGAGCCCGCCGGAGCCCGCCGGAGCCCGCCGGAGGAGGACAGCTGCTGCCGCTCCAACAAGGAGGAATCAGAGACAGAACAACGCGATCGCCGCCGATGATGAAATTGTGAACGCCGGTGCTGTGCGTGGTGCAAGAGGCAGGAGGTTGAAAGACGAACAGGGAGCGGAGAGGGAGAAGGAGCAGTCACTGGTTAGGGTTTTGGAAGAGGAAGACATGGATGAGTACGATAGTGGTGGCCGCAGTGCCGATAAGGCTCCGGGAGCTGATGACGAAGGCACGGCAGCTCCTATTCCGGAGAAGGTCCAAGTTGGTGGTTCCCCTTTGTACAGAATTGATAGGAAACTTGGGAAGGGAGGATTTGGGCAGGTTTATGTTGGTCGGCGGGTAGGAGCTATGAATTCTAGTGAACGAGGTGGGGCTGGTGCTGTTGAGGTAGCCTTAAAGTTTGAGCATAGAAGCAGCAAGGGGTGCAATTATGGACCTCCATATGAGTGGCAGGTTTACAATGCATTGGGTGGTAGTCACGGTGTTCCACGAGTTCATTACAAGGGACGGCAAGGTGACTACTATATTATGGTCATGGATATGCTTGGTCCTAGTTTGTGGGATGTTTGGAATAACAACTCACACACGATGTCAACTGAAATGGTTGCATGTATTGCAATTGAGGCCATCTCCATATTAGAGAAGATGCATTCTAGAGGATATGTGCATGGTGATGTAAAACCTGAGAACTTTTTGCTTGGACCCCCTGGAACTCCTGATGAAAAGAAGTTATTTCTGGTTGATCTTGGATTAGCAACTCAGTGGCGTGATAGTTCGACTGGCCTTCATGTTGACTATGATCAACGACCAGATGTTTTTAGGGGCACAGTTCGTTATGCTAGTGTGCATGCTCATCTTGGTAGAACAGGTAGCAGGAGAGATGACTTGGAATCTCTTGCTTACACTCTTGTCTTCCTTCTTCGTGGTCGGCTACCTTGGCAAGGATATCAGGGAGAAAATAAAGGATTTCTTGTCTGCAAGAAAAAGATGGCCACTTCTCCAGAAACATTATGTTGCTTTTGTCCTCAACCATTCCGGCATTTTGTTGAATATGTAGTGAATTTGAAGTTTGACGAAGAGCCAAACTATGCAAAATATATATCCCTTTTTGATGGAATTGTGGGCCCAAATCCAGACATCAGGCCAATAAACACTGAGGGTGCTCAGAAGCTTATATGTCAGGTTGGACATAAGCGGGGCCGATTGACTATGGAAGAGGATGATGATGAACAACCGAAGAAGAAGGTTCGAATGGGAATGCCTGCTACCCAATGGATTAGTGTTTACAATGCTCGTCGACCAATGAAGCAAAGGTATCATTATAATGTTGCTGATGTGCGGCTGGCTCAACATATTGTTAAAGGAAATGAAGATGGTTTATTTATAAGCAGTGTGGCTTCTTGTTCTAATCTTTGGGCACTCATTATGGATGCTGGCACTGGTTTCACTGCACAAGTTTATGAACTCTCTCCCTACTTCCTTCACAAGGAATGGATTATGGAACAGTGGGAGAAGAATTATTACATTAGTGCCATAGCTGGAGCTAGTAATGGATGCTCATTGGTTGTAATGTCTAAAGGTACCCAATACTTGCAGCAATCATATAAAGTCAGCGATTCATTTCCGTTTAAGTGGATCAATAAAAAATGGAGAGAAGGATTTTATGTCACTGCTATGGCCACTGCTGGCACTAGATGGGCTATTGTTATGTCCCGTGGTGCTGGTTTTTCAGACCAGGTTGTGGAACTTGATTTCTTGTATCCCAGTGAAGGCATTCATCGAAGGTGGGATAATGGTTATCGCATCACCTCAACTGCTGCTACTTGGGACCAAGCTGCATTTGTTCTTAGTGTCCCAAGAAGAAAACCAGCTGATGAAACTCAGGAGACACTCCGCACATCTGCTTTTCCTAGTACCCATGTCAAGGAAAAATGGGCAAAGAACCTCTATATTGCATCTATTTGTTACGGGAGAACAGTTTGGGAACTGAAGATCATCTCTGACAAATTTTCTGAACAATTCAGTTCAGCATTGATTATCCAAAGTCTACATGTTAGGCTTCTCCTGTTGGCTATCATGGAAGCTCATCTTGGGAGATAA 2196 0.4563 MQCTTQIPIRSLNHTRRSPPEPAGARRRRTAAAAPTRRNQRQNNAIAADDEIVNAGAVRGARGRRLKDEQGAEREKEQSLVRVLEEEDMDEYDSGGRSADKAPGADDEGTAAPIPEKVQVGGSPLYRIDRKLGKGGFGQVYVGRRVGAMNSSERGGAGAVEVALKFEHRSSKGCNYGPPYEWQVYNALGGSHGVPRVHYKGRQGDYYIMVMDMLGPSLWDVWNNNSHTMSTEMVACIAIEAISILEKMHSRGYVHGDVKPENFLLGPPGTPDEKKLFLVDLGLATQWRDSSTGLHVDYDQRPDVFRGTVRYASVHAHLGRTGSRRDDLESLAYTLVFLLRGRLPWQGYQGENKGFLVCKKKMATSPETLCCFCPQPFRHFVEYVVNLKFDEEPNYAKYISLFDGIVGPNPDIRPINTEGAQKLICQVGHKRGRLTMEEDDDEQPKKKVRMGMPATQWISVYNARRPMKQRYHYNVADVRLAQHIVKGNEDGLFISSVASCSNLWALIMDAGTGFTAQVYELSPYFLHKEWIMEQWEKNYYISAIAGASNGCSLVVMSKGTQYLQQSYKVSDSFPFKWINKKWREGFYVTAMATAGTRWAIVMSRGAGFSDQVVELDFLYPSEGIHRRWDNGYRITSTAATWDQAAFVLSVPRRKPADETQETLRTSAFPSTHVKEKWAKNLYIASICYGRTVWELKIISDKFSEQFSSALIIQSLHVRLLLLAIMEAHLGR 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01388 731 MobiDBLite consensus disorder prediction 61 85 - -
Cca03g01388 731 PANTHER - 81 667 - -
Cca03g01388 731 SMART serkin_6 126 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g01388 731 CDD STKc_CK1 126 402 - -
Cca03g01388 731 PANTHER CASEIN KINASE-RELATED 81 667 - -
Cca03g01388 731 Coils Coil 67 87 - -
Cca03g01388 731 ProSitePatterns Protein kinases ATP-binding region signature. 132 165 IPR017441 GO:0005524
Cca03g01388 731 ProSitePatterns Serine/Threonine protein kinases active-site signature. 253 265 IPR008271 GO:0004672|GO:0006468
Cca03g01388 731 Pfam Protein kinase domain 126 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g01388 731 MobiDBLite consensus disorder prediction 1 117 - -
Cca03g01388 731 ProSiteProfiles Protein kinase domain profile. 126 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g01388 731 SUPERFAMILY Protein kinase-like (PK-like) 126 406 IPR011009 -
Cca03g01388 731 Gene3D Transferase(Phosphotransferase) domain 1 98 449 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01388 Cca-Chr3 32120521 32126453 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01388 221 402 MAP Kinase Kinase Kinase AT5G50180 25.000 1.64e-08 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Cca03g01388 Pkinase 3.4e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01388 - - gmx:100779382 1231.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01388 03 32120521 32126453 Cca03g01388 03 32120521 32126453 ECH