Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01380 ATGACCAAAGTACCCCTATTCATGATGAAATTTCCCTTATATTTGTTTCTCTTACTCAGCATCACACTACCCTCTCAAGTAATTTCACAAACCGAACAAACAATCCTACTCAGCCTCAAACGGGAACTGGGGGACCCACCCTCGCTCCAATCATGGAAACCGTCGCCGTCGGCGCCGTGCGACTGGCCGGAGATTCGCTGCGCCGGCGGCGCCGTCACGAAGCTCCTCCTCTCCGGAAAAGGCATCACCGCGCAGAACCTCCCCGCCGCCAGAATCTGCAACCTGAAGCACCTCACCATGCTCGACCTCTCCGACAACTCCATCGCCGGCGAGTTGCCGACGACTTTGTACAACTGCTCCAACCTGCGGCACCTTGACCTGTCGCAGAACTACCTCGCCGGAACAATCCCCGCCGACGTGGACCGCCTCAAAACCCTAACTCACCTCAACCTCGGCGGCAACTCCTTCTCCGGCGAGATTCCGGCGGCGATCGGAAACCTGCCGGAGCTTCAGACACTGCAGCTTTTCACTAACCCCTTCAACGGAACAATCCCAAGGGAAATCGGTAGCTTGTCCAATCTCGAATATTTAGGTTTGGCTTATAACGTTAAACTCTCTCCGGCGAAAATCCCGTTGGAGTTTGCTAAGTTAAGAAAATTGAGGGTTATGTGGATGACGAAGTGTAACTTAATCGGAGAGATTCCGGAATCTTTCGGGAATCTCACGAATCTGGAACGGTTGGATTTGTCGGTAAACAATTTAACAGGGAGAATTCCTAGGAGTTTGTTCTCGCTTAGAAAGTTGAAGTTTTTATACCTGTTTCTTAATGGGTTGTCGGGTGTGATACCTAGTACGATGCAGTGTTTGGATTTAATAGATGTTGATTTGGCTAGGAACAATTTAACAGGTTTTATACCACGAGAGTTTGGGAAGTTGAAGAGTTTGAGCACCTTGCACTTGTATTCGAATCAGTTATCTGGTGAGATTCCCATTAGTATAAGCCTAATTCCTAGTCTTAAGTATTTCAGGGTTTATGGGAATAACTTGAGTGGAACACTGCCTCCGGAGCTAGGCTTGCATTCGAGGCTTATTGCGTTTGAATTTTCTGAGAATCAAATCAGTGGTGGGTTACCGGAACATTTATGTGACGGCGGTGTTCTTATGGGTGTGGTTGCTTTTTCGAACAATCTTAGTGGGGTTTTGCCTGAATGGCTTGGGAATTGTCCTTCTCTGGCTACGGTTCAGGTTTTTGATAACAAGTTTTGGGGGGAGGTTCCTTTGGGCTTGTGGACTTCCAGGAACCTTTCTTCTTTGATTCTGAGCAATAACTCGTTTTCTGGCGAACTTCCGAGGAAACTGTTTCGGAATCTGACGAGGCTTGAGATCGGGAACAACAGGTTTTCGGGAAGGATATCTGTTGGGATTACTTCAGCTTCGAATCTGGTGTTTTTTGATGCAAGAAACAACATGCTCTCGGGTGAAATTCCGAGGGAATTGACGCGTCTTTCTCGGCTTAGTACTCTCAAGCTTGATGGTAATCAACTTTCTGGTGCAATTCCTTCTGAGATTGTTTCGTGGCAATCACTGAGTACTATGACACTCTCCGGAAACAAACTATCTGGAAAGATTCCAACAGCTATGGCTGCTCTTTCTAGCTTGGCTTATTTGGACTTGTCTCAGAATGACTTATCGGGTGAAATCCCACCTCGGTTTGAACAATTGAAGCTTGTTTTTCTCAACTTGTCATCCAACCAACTATCAGGGAGCATACCTGATGAGTTTAATAACCTGGCATTTGAAAACAGTTTCTTGAACAATCCTCATCTGTGTGCTTACAACCCAAATCTCAACCTTCCTAACTGCTTCACCAAAACCGAGCCAGACGCCCGCAAATTGTCTTTCAAGTCACTTGCTCTGATTCTGGTTGGAACCATCGTTGTGTTGTTGTTGGTCACAGCCTCCTTGGTCTTGTATAAGAAGCAATGGCGCAAAAAGCAGTGCGCGCGTAAGGTTTCAACGTGGAGGCTGACCTCTTTCCAGAAGCTTGATCTCGGGGAAATGAACCTCTTCTCAAGTTTGACAGAGAATAACCTCATAGGAAGTGGAGGGTTTGGGAAAGTTTACCGGGTTGCTTCAAACCGTCCCGGGGAATATGTTGCGGTGAAAAAGATTTGGAATCGCAGAGATGTGGATGACAAGTTGATGAAAGAGTTCATGGCCGAGGTTGAGATCTTAGGCAATATTCGGCACTCGAATATAGTGAAGCTTTTGTGCTGTTATTCAAGTGAGAACTCAAAAGTTCTTGTTTATGAATACATGGAAAATCAGAGCCTGGACAAATGGCTTCATGGGAAGTTGAAAACATCACCTAATGGGttgagttggccaacgaggttgaatattgccattggggctgcacaaggtctttgctacatgcaccatgaattctcaccccccatcattcaccgagatgtcaaatctagcaatatactgttggactcagagttcagagctaaaatagcagattttggtctggccaagatgttgACAAAGCCCGGGGAGCCACACACCATGTCTACTTTAGCAGGCTCTTTTGGCTATATTCCACCGGAATATGCGTATTCAACTAAGATTAACGAGAAAGTTGACGTATACAGCTTTGGGGTTGTGCTCTTAGAGCTTGTGACGGGAAAAAAGCCTAATAAAGGAGGCGAGCCTGCATGCAGCCTAGTTGATTGGGCGTGGGATCATTTTAGTGAAGGGAAGAGCCTTGCTGATGCATTCTATGAGGATATCAAAGATCCACGTTACGAGGAAGAGATGGCTAGTGTCTTCAAATTGGGCCTCCTTTGCACAAGAACATTGCCTTCAACTAGGCCTTCCACGAAGGATATTTTGAAAGTTCTTCGTCATTGTCATTCAGGTTCTACACGTACAAGAGTGGGACACGAGTTTGATATTAATCCTCTTCTTAGTGATACAAGGTACATTTATAGTTACAAGGAGAGCAATGCTGCAAGCAATAACTCATCTTGGTGA 3039 0.434 MTKVPLFMMKFPLYLFLLLSITLPSQVISQTEQTILLSLKRELGDPPSLQSWKPSPSAPCDWPEIRCAGGAVTKLLLSGKGITAQNLPAARICNLKHLTMLDLSDNSIAGELPTTLYNCSNLRHLDLSQNYLAGTIPADVDRLKTLTHLNLGGNSFSGEIPAAIGNLPELQTLQLFTNPFNGTIPREIGSLSNLEYLGLAYNVKLSPAKIPLEFAKLRKLRVMWMTKCNLIGEIPESFGNLTNLERLDLSVNNLTGRIPRSLFSLRKLKFLYLFLNGLSGVIPSTMQCLDLIDVDLARNNLTGFIPREFGKLKSLSTLHLYSNQLSGEIPISISLIPSLKYFRVYGNNLSGTLPPELGLHSRLIAFEFSENQISGGLPEHLCDGGVLMGVVAFSNNLSGVLPEWLGNCPSLATVQVFDNKFWGEVPLGLWTSRNLSSLILSNNSFSGELPRKLFRNLTRLEIGNNRFSGRISVGITSASNLVFFDARNNMLSGEIPRELTRLSRLSTLKLDGNQLSGAIPSEIVSWQSLSTMTLSGNKLSGKIPTAMAALSSLAYLDLSQNDLSGEIPPRFEQLKLVFLNLSSNQLSGSIPDEFNNLAFENSFLNNPHLCAYNPNLNLPNCFTKTEPDARKLSFKSLALILVGTIVVLLLVTASLVLYKKQWRKKQCARKVSTWRLTSFQKLDLGEMNLFSSLTENNLIGSGGFGKVYRVASNRPGEYVAVKKIWNRRDVDDKLMKEFMAEVEILGNIRHSNIVKLLCCYSSENSKVLVYEYMENQSLDKWLHGKLKTSPNGLSWPTRLNIAIGAAQGLCYMHHEFSPPIIHRDVKSSNILLDSEFRAKIADFGLAKMLTKPGEPHTMSTLAGSFGYIPPEYAYSTKINEKVDVYSFGVVLLELVTGKKPNKGGEPACSLVDWAWDHFSEGKSLADAFYEDIKDPRYEEEMASVFKLGLLCTRTLPSTRPSTKDILKVLRHCHSGSTRTRVGHEFDINPLLSDTRYIYSYKESNAASNNSSW 1012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01380 1012 SUPERFAMILY L domain-like 35 377 - -
Cca03g01380 1012 PANTHER KINASE FAMILY WITH LEUCINE-RICH REPEAT DOMAIN-CONTAINING PROTEIN 17 985 - -
Cca03g01380 1012 Pfam Leucine Rich Repeat 121 140 IPR001611 GO:0005515
Cca03g01380 1012 Pfam Leucine Rich Repeat 146 167 IPR001611 GO:0005515
Cca03g01380 1012 ProSitePatterns Serine/Threonine protein kinases active-site signature. 820 832 IPR008271 GO:0004672|GO:0006468
Cca03g01380 1012 SMART LRR_typ_2 241 265 IPR003591 -
Cca03g01380 1012 SMART LRR_typ_2 550 573 IPR003591 -
Cca03g01380 1012 SMART LRR_typ_2 502 526 IPR003591 -
Cca03g01380 1012 SMART LRR_typ_2 95 119 IPR003591 -
Cca03g01380 1012 SMART LRR_typ_2 433 456 IPR003591 -
Cca03g01380 1012 SMART LRR_typ_2 312 335 IPR003591 -
Cca03g01380 1012 SMART LRR_typ_2 143 167 IPR003591 -
Cca03g01380 1012 SMART LRR_typ_2 336 360 IPR003591 -
Cca03g01380 1012 Pfam Protein kinase domain 695 967 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g01380 1012 ProSitePatterns Protein kinases ATP-binding region signature. 699 723 IPR017441 GO:0005524
Cca03g01380 1012 Pfam Leucine rich repeat N-terminal domain 32 67 IPR013210 -
Cca03g01380 1012 SUPERFAMILY Protein kinase-like (PK-like) 689 969 IPR011009 -
Cca03g01380 1012 Gene3D Transferase(Phosphotransferase) domain 1 773 988 - -
Cca03g01380 1012 Gene3D Ribonuclease Inhibitor 291 386 IPR032675 -
Cca03g01380 1012 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 17 985 - -
Cca03g01380 1012 ProSiteProfiles Protein kinase domain profile. 693 986 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g01380 1012 Pfam Leucine rich repeat 235 277 IPR001611 GO:0005515
Cca03g01380 1012 Pfam Leucine rich repeat 503 563 IPR001611 GO:0005515
Cca03g01380 1012 SMART serkin_6 693 969 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g01380 1012 Gene3D Phosphorylase Kinase; domain 1 675 772 - -
Cca03g01380 1012 Gene3D Ribonuclease Inhibitor 390 629 IPR032675 -
Cca03g01380 1012 Gene3D Ribonuclease Inhibitor 183 290 IPR032675 -
Cca03g01380 1012 Gene3D Ribonuclease Inhibitor 29 182 IPR032675 -
Cca03g01380 1012 SUPERFAMILY L domain-like 393 597 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01380 Cca-Chr3 32011629 32015219 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01380 22 991 Receptor kinase-like Gene Family AT5G25930 54.341 0.0 1019
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Cca03g01380 Pkinase 1.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01380 K00924 - gmx:100782466 1525.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01380 03 32011629 32015219 Cca03g01380 03 32011629 32015219 ECH