Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01377 ATGGCCATTGCAACGGAGACCCAACTTCAACCTCAACAACACAAGGCTTCTTCGGAGGATTCGGGTTCAGATATGGATCAGAGAAGGTGGACGCTCAATGATTTTGATATTGGAAAGCCTCTTGGAAGGGGGAAATTTGGCCATGTCTATTTGGCCAGAGAAAAGACTAGTAATCATATTGTTGCTTTGAAAGTACTCTTTAAGAGCCAGTTGCAACAATCCCAAGTTGTGCATCAACTTAGAAGAGAAGTTGAAATCCAGAGTCATCTCCGACATCCCCACATCTTGCGCCTCTATGGATACTTCTATGATCAGAAGCGAGTTTATTTGATTTTAGAGTATGCACCCAAAGGTGAACTTTACAAGGAATTGCAAAGATGCAAATATTTCAGTGAAAGGCGTGCAGCTACTTATGTTGCATCATTGGCCCGAGCCCTTATATATTGTCATGGAAAGCATGTAATACATAGGGACATTAAACCAGAGAACCTTCTTATTGGTGCACAGGGTGAGCTGAAAATAGCAGACTTTGGGTGGTCAGTGCATACATTCAATCGCAGGCGGACCATGTGTGGCACACTGGATTACCTTCCTCCTGAGATGGTGGAGAGTGTAGAACATGATGCGAGTGTGGATATATGGAGCCTTGGTGTCCTGTGCTATGAGTTTCTTTATGGAGTCCCTCCTTTTGAGGCTAAAGAACATTCTGATACTTACAGGAGGATAGTACAAGTGGATCTCAAGTTCCCTCCTAAGCCAATAGTGTCTTCCGCTGCAAAGGATCTCATTAGTCAGATGCTGGTCAAGGATTCCTCTCAGCGTCTACCATTGCACAAACTCCTTGAACACCCTTGGATTGTTCAGAATGCAGAGCCATCCGGTCCATTGCCTTCTTTGAAATTTGAATTTGTCATTGTTGAGATTCGTGGATTTCCAGATATTGACCAATTTTTTTGGGGTTCGGGTATGGAGCAAAGAAGGTGGACGCTTAATGATTTTGACATTGGAAAACCTCTTGGAAAGGGAAAATTCGGCCAAGTCTATTTGGTTAGAGAAAAGAGTAGTAATCATATTGTTGCTTTGAAGGTACTCTTTAAGAGTCAATTGCAACACTCCGAAGTTGTGCATCAACTTCGACGAGAAGTTGAAATACAAAGTCATCTCCGACATCCCAACATCTTGCGCCTTTATGGATACTTTTATGATCAGAAACGAGTTTATTTGATTTTAGAGTATGCACTCAAAGGTGAACTTTACAAGGAATTGCAGAAATGTAAATATTTCAGTGAAAGGCGTGCAGCTACTTATCTTGCATCATTGGCCAGAGCCCTTATATATTGCCATGGAAAACATGTAATACATAGGGATATAAAACCAGAGAACATTCTTATTGGTGCTCAGGGTGAACTGAAAATAGCAGACTTTGGATGGTCGGTGCATGCATTCAATCGCAGGAGGACCATGTGTGGCACACTGGATTATCTTCCTCCCGAGATGGTGGAGAATGTAGAACATGATGCGAGTGTGGATATATGGAGCCTTGGTGTCATGTGCTATGAGTTTCTCTATGGAGTCCCTCCTTTTGATGCTAAAGAGCATTCTGAAACTTACAGGAAAATAGTACGAGTGGATCTCAAGTTCCCTCCTAAACCAATTGTGTCTTCCACCGCAAAGGATCTCATTCGTCAGATGCTGGTCAAGGATTCCTCTCAACGTCTACCATTGCACAAACTCCTTGAACACCCTTGGATTGTTCAGAATGCGGAGCCGTCCGGTGTATATAGGGGCTAG 1791 0.4294 MAIATETQLQPQQHKASSEDSGSDMDQRRWTLNDFDIGKPLGRGKFGHVYLAREKTSNHIVALKVLFKSQLQQSQVVHQLRREVEIQSHLRHPHILRLYGYFYDQKRVYLILEYAPKGELYKELQRCKYFSERRAATYVASLARALIYCHGKHVIHRDIKPENLLIGAQGELKIADFGWSVHTFNRRRTMCGTLDYLPPEMVESVEHDASVDIWSLGVLCYEFLYGVPPFEAKEHSDTYRRIVQVDLKFPPKPIVSSAAKDLISQMLVKDSSQRLPLHKLLEHPWIVQNAEPSGPLPSLKFEFVIVEIRGFPDIDQFFWGSGMEQRRWTLNDFDIGKPLGKGKFGQVYLVREKSSNHIVALKVLFKSQLQHSEVVHQLRREVEIQSHLRHPNILRLYGYFYDQKRVYLILEYALKGELYKELQKCKYFSERRAATYLASLARALIYCHGKHVIHRDIKPENILIGAQGELKIADFGWSVHAFNRRRTMCGTLDYLPPEMVENVEHDASVDIWSLGVMCYEFLYGVPPFDAKEHSETYRKIVRVDLKFPPKPIVSSTAKDLIRQMLVKDSSQRLPLHKLLEHPWIVQNAEPSGVYRG 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01377 596 ProSiteProfiles Protein kinase domain profile. 333 584 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g01377 596 SMART serkin_6 35 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g01377 596 SMART serkin_6 333 584 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g01377 596 SUPERFAMILY Protein kinase-like (PK-like) 25 303 IPR011009 -
Cca03g01377 596 PANTHER SERINE/THREONINE-PROTEIN KINASE IAL-RELATED 1 294 IPR030616 GO:0004672
Cca03g01377 596 PANTHER SERINE/THREONINE-PROTEIN KINASE IAL-RELATED 323 596 IPR030616 GO:0004672
Cca03g01377 596 Pfam Protein kinase domain 335 584 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g01377 596 Pfam Protein kinase domain 37 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g01377 596 ProSitePatterns Protein kinases ATP-binding region signature. 41 64 IPR017441 GO:0005524
Cca03g01377 596 Gene3D Phosphorylase Kinase; domain 1 321 416 - -
Cca03g01377 596 Gene3D Phosphorylase Kinase; domain 1 23 118 - -
Cca03g01377 596 ProSitePatterns Protein kinases ATP-binding region signature. 339 362 IPR017441 GO:0005524
Cca03g01377 596 CDD STKc_Aurora 34 287 - -
Cca03g01377 596 ProSiteProfiles Protein kinase domain profile. 35 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g01377 596 CDD STKc_Aurora 332 585 - -
Cca03g01377 596 ProSitePatterns Serine/Threonine protein kinases active-site signature. 452 464 IPR008271 GO:0004672|GO:0006468
Cca03g01377 596 MobiDBLite consensus disorder prediction 1 18 - -
Cca03g01377 596 PANTHER SERINE/THREONINE-PROTEIN KINASE AURORA-1 1 294 - -
Cca03g01377 596 MobiDBLite consensus disorder prediction 1 26 - -
Cca03g01377 596 ProSitePatterns Serine/Threonine protein kinases active-site signature. 154 166 IPR008271 GO:0004672|GO:0006468
Cca03g01377 596 PANTHER SERINE/THREONINE-PROTEIN KINASE AURORA-1 323 596 - -
Cca03g01377 596 Gene3D Transferase(Phosphotransferase) domain 1 417 592 - -
Cca03g01377 596 Gene3D Transferase(Phosphotransferase) domain 1 119 299 - -
Cca03g01377 596 SUPERFAMILY Protein kinase-like (PK-like) 323 588 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01377 Cca-Chr3 31982993 31990385 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01377 324 595 CBL-interacting serine-threonine protein kinases AT5G10930 35.842 8.26e-52 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Aur Cca03g01377 Pkinase 4.1e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01377 K08850 - gmx:100803678 573.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01377 03 31982993 31990385 Cca03g01377 03 31982993 31990385 ECH